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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0020718 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0020718_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d021980_T001 | |
| Neighborhood | Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d021980_T001 | |
| Cluster | Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_165 | |
| Cluster | Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_24 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| MF | GO:0008270 | zinc ion binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 495 | 529 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 365 | 390 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 230 | 253 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 497 | 530 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 260 | 293 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 397 | 428 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 492 | 697 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 30 | 173 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 174 | 328 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 363 | 393 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 394 | 428 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 230 | 253 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 469 | 491 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 397 | 426 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 569 | 593 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 365 | 392 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 332 | 491 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 258 | 292 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 495 | 541 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 260 | 306 |
| IPR032867 | DYW_dom | Pfam | 710 | 802 |
| IPR046848 | E_motif | Pfam | 614 | 674 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 363 | 393 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 332 | 491 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 258 | 292 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 260 | 293 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 397 | 428 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 365 | 390 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 230 | 253 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 497 | 530 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 495 | 529 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 492 | 697 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 30 | 173 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 174 | 328 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 394 | 428 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 569 | 593 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 469 | 491 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 397 | 426 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 230 | 253 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 365 | 392 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 495 | 541 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 260 | 306 |
| IPR032867 | DYW_dom | Pfam | 668 | 792 |
No CAZYmes available for this sequence
| No external refs found! |