Zm00001d022045_T001

Description : tRNA/rRNA methyltransferase (SpoU) family protein

Gene families : OG_01_0008288 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008288_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d022045_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d022045_T001
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_166
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_111

Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	ISM	GOs from InterProScan
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006400	tRNA modification	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008033	tRNA processing	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	ISM	GOs from InterProScan
MF	GO:0008173	RNA methyltransferase activity	ISM	GOs from InterProScan
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0030488	tRNA methylation	ISM	GOs from InterProScan
BP	GO:0032259	methylation	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR033671	TrmH	CDD	136	298
IPR033671	TrmH	Hamap	133	327
IPR029026	tRNA_m1G_MTases_N	Gene3D	126	333
IPR001537	SpoU_MeTrfase	Pfam	151	292
IPR029028	Alpha/beta_knot_MTases	SUPERFAMILY	132	313
IPR033671	TrmH	PANTHER	2	343
IPR033671	TrmH	CDD	136	298
IPR001537	SpoU_MeTrfase	Pfam	151	292
IPR029026	tRNA_m1G_MTases_N	Gene3D	126	333
IPR033671	TrmH	Hamap	133	327
IPR033671	TrmH	PANTHER	1	344
IPR029028	Alpha/beta_knot_MTases	SUPERFAMILY	132	313

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d022045_T001

Expression Profile

Co-expression Networks

Functional Annotation