Zm00001d022046_T004

Description : SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein

Gene families : OG_01_0008394 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008394_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d022046_T004
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d022046_T004
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_157
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_58

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:0140658	ATP-dependent chromatin remodeler activity	ISM	GOs from InterProScan
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR003615	HNH_nuc	SMART	1086	1134
IPR014001	Helicase_ATP-bd	ProSiteProfiles	227	391
IPR014001	Helicase_ATP-bd	SMART	214	409
IPR027417	P-loop_NTPase	SUPERFAMILY	180	442
IPR002711	HNH	Pfam	1102	1135
IPR000330	SNF2_N	Pfam	222	465
IPR027417	P-loop_NTPase	SUPERFAMILY	329	706
IPR027417	P-loop_NTPase	Gene3D	490	733
IPR038718	SNF2-like_sf	Gene3D	186	466
IPR003615	HNH_nuc	CDD	1088	1137
IPR001650	Helicase_C	Pfam	553	652
IPR001650	Helicase_C	ProSiteProfiles	548	698
IPR001650	Helicase_C	SMART	569	652
IPR001650	Helicase_C	ProSiteProfiles	548	698
IPR027417	P-loop_NTPase	Gene3D	490	733
IPR038718	SNF2-like_sf	Gene3D	186	466
IPR027417	P-loop_NTPase	SUPERFAMILY	180	442
IPR003615	HNH_nuc	SMART	1086	1134
IPR003615	HNH_nuc	CDD	1088	1137
IPR014001	Helicase_ATP-bd	SMART	214	409
IPR001650	Helicase_C	Pfam	554	652
IPR027417	P-loop_NTPase	SUPERFAMILY	329	706
IPR014001	Helicase_ATP-bd	ProSiteProfiles	227	391
IPR000330	SNF2_N	Pfam	236	465
IPR002711	HNH	Pfam	1100	1136
IPR001650	Helicase_C	SMART	569	652

No CAZYmes available for this sequence

External Links

No external refs found!