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  5. Zm00001d022058_T001

Zm00001d022058_T001


Description : Transducin/WD40 repeat-like superfamily protein


Gene families : OG_01_0002272 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002272_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d022058_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d022058_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_137
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_215


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
BP GO:0042254 ribosome biogenesis ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 100 434
IPR001680 WD40_rpt SMART 193 232
IPR001680 WD40_rpt SMART 262 300
IPR001680 WD40_rpt SMART 301 342
IPR001680 WD40_rpt SMART 97 134
IPR001680 WD40_rpt SMART 348 388
IPR001680 WD40_rpt SMART 391 429
IPR001680 WD40_rpt SMART 136 181
IPR020472 G-protein_beta_WD-40_rep PRINTS 287 301
IPR020472 G-protein_beta_WD-40_rep PRINTS 219 233
IPR020472 G-protein_beta_WD-40_rep PRINTS 375 389
IPR001680 WD40_rpt ProSiteProfiles 269 309
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 100 427
IPR001680 WD40_rpt Pfam 198 231
IPR001680 WD40_rpt Pfam 351 388
IPR001680 WD40_rpt Pfam 266 300
IPR001680 WD40_rpt Pfam 106 133
IPR001680 WD40_rpt Pfam 138 180
IPR019775 WD40_repeat_CS ProSitePatterns 375 389
IPR001680 WD40_rpt ProSiteProfiles 355 397
IPR028599 WDR12/Ytm1 Hamap 3 432
IPR001680 WD40_rpt ProSiteProfiles 200 234
IPR012972 NLE Pfam 9 76
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 100 434
IPR001680 WD40_rpt ProSiteProfiles 355 397
IPR001680 WD40_rpt ProSiteProfiles 200 234
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 100 427
IPR028599 WDR12/Ytm1 Hamap 3 432
IPR012972 NLE Pfam 9 76
IPR001680 WD40_rpt Pfam 139 180
IPR001680 WD40_rpt Pfam 351 388
IPR001680 WD40_rpt Pfam 198 231
IPR001680 WD40_rpt Pfam 266 300
IPR019775 WD40_repeat_CS ProSitePatterns 375 389
IPR001680 WD40_rpt SMART 262 300
IPR001680 WD40_rpt SMART 193 232
IPR001680 WD40_rpt SMART 301 342
IPR001680 WD40_rpt SMART 348 388
IPR001680 WD40_rpt SMART 97 134
IPR001680 WD40_rpt SMART 391 429
IPR001680 WD40_rpt SMART 136 181
IPR020472 G-protein_beta_WD-40_rep PRINTS 287 301
IPR020472 G-protein_beta_WD-40_rep PRINTS 219 233
IPR020472 G-protein_beta_WD-40_rep PRINTS 375 389
IPR001680 WD40_rpt ProSiteProfiles 269 309

No CAZYmes available for this sequence

No external refs found!