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  5. Zm00001d022215_T001

Zm00001d022215_T001


Description : FAD-binding Berberine family protein


Gene families : OG_01_0008062 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008062_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d022215_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d022215_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_209
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_31


Type GO Term Name Evidence Source
MF GO:0016491 oxidoreductase activity ISM GOs from InterProScan
MF GO:0050660 flavin adenine dinucleotide binding ISM GOs from InterProScan
MF GO:0071949 FAD binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR016166 FAD-bd_PCMH ProSiteProfiles 78 263
IPR012951 BBE Pfam 462 510
IPR016169 FAD-bd_PCMH_sub2 Gene3D 148 510
IPR016167 FAD-bd_PCMH_sub1 Gene3D 40 143
IPR006094 Oxid_FAD_bind_N Pfam 82 229
IPR036318 FAD-bd_PCMH-like_sf SUPERFAMILY 76 264
IPR006094 Oxid_FAD_bind_N Pfam 82 229
IPR016166 FAD-bd_PCMH ProSiteProfiles 78 263
IPR036318 FAD-bd_PCMH-like_sf SUPERFAMILY 76 264
IPR016167 FAD-bd_PCMH_sub1 Gene3D 40 143
IPR016169 FAD-bd_PCMH_sub2 Gene3D 148 510
IPR012951 BBE Pfam 462 510
HMM Family HMM Length Query Length e-Value Query Start Query End
AA7 458 528 5.2e-69 80 326
No external refs found!