Zm00001d022267_T003

Description : chromatin remodeling factor18

Gene families : OG_01_0001636 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001636_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d022267_T003
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d022267_T003
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_307
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_191

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003697	single-stranded DNA binding	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	DNA damage response	None	Extended
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0031297	replication fork processing	ISM	GOs from InterProScan
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0036310	ATP-dependent DNA/DNA annealing activity	ISM	GOs from InterProScan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0045005	DNA-templated DNA replication maintenance of fidelity	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:0140658	ATP-dependent chromatin remodeler activity	ISM	GOs from InterProScan
MF	GO:0140666	annealing activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
MF	GO:1990814	DNA/DNA annealing activity	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR001650	Helicase_C	ProSiteProfiles	517	737
IPR027417	P-loop_NTPase	SUPERFAMILY	198	439
IPR001650	Helicase_C	SMART	542	687
IPR001650	Helicase_C	Pfam	642	687
IPR027417	P-loop_NTPase	SUPERFAMILY	441	731
IPR000330	SNF2_N	Pfam	220	490
IPR014001	Helicase_ATP-bd	ProSiteProfiles	225	397
IPR038718	SNF2-like_sf	Gene3D	190	441
IPR027417	P-loop_NTPase	Gene3D	442	761
IPR010003	HARP_dom	ProSiteProfiles	112	185
IPR014001	Helicase_ATP-bd	SMART	212	409
IPR027417	P-loop_NTPase	SUPERFAMILY	198	439
IPR010003	HARP_dom	ProSiteProfiles	112	185
IPR014001	Helicase_ATP-bd	SMART	212	409
IPR001650	Helicase_C	SMART	542	687
IPR001650	Helicase_C	Pfam	513	687
IPR038718	SNF2-like_sf	Gene3D	190	441
IPR027417	P-loop_NTPase	Gene3D	442	761
IPR000330	SNF2_N	Pfam	234	487
IPR001650	Helicase_C	ProSiteProfiles	517	737
IPR027417	P-loop_NTPase	SUPERFAMILY	441	731
IPR014001	Helicase_ATP-bd	ProSiteProfiles	225	397

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d022267_T003

Expression Profile

Co-expression Networks

Functional Annotation