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  5. Zm00001d022335_T002

Zm00001d022335_T002


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0006952 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006952_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d022335_T002
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d022335_T002
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_157
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_184


Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome ISM GOs from InterProScan
MF GO:0005515 protein binding ISM GOs from InterProScan
BP GO:0006396 RNA processing ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 523 688
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 391 501
IPR011990 TPR-like_helical_dom_sf Gene3D 360 524
IPR011990 TPR-like_helical_dom_sf Gene3D 678 814
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 41 96
IPR011990 TPR-like_helical_dom_sf Gene3D 529 640
IPR011990 TPR-like_helical_dom_sf Gene3D 40 207
IPR003107 HAT SMART 548 580
IPR003107 HAT SMART 106 138
IPR003107 HAT SMART 730 763
IPR003107 HAT SMART 140 174
IPR003107 HAT SMART 621 655
IPR003107 HAT SMART 693 728
IPR003107 HAT SMART 64 96
IPR003107 HAT SMART 287 322
IPR003107 HAT SMART 582 616
IPR003107 HAT SMART 450 486
IPR002885 Pentatricopeptide_rpt Pfam 276 298
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 683 775
IPR045075 Syf1-like PANTHER 34 827
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 110 217
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 391 501
IPR011990 TPR-like_helical_dom_sf Gene3D 360 524
IPR011990 TPR-like_helical_dom_sf Gene3D 678 814
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 683 775
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 523 688
IPR045075 Syf1-like PANTHER 32 877
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 41 96
IPR011990 TPR-like_helical_dom_sf Gene3D 529 640
IPR011990 TPR-like_helical_dom_sf Gene3D 40 207
IPR003107 HAT SMART 548 580
IPR003107 HAT SMART 106 138
IPR003107 HAT SMART 730 763
IPR003107 HAT SMART 140 174
IPR003107 HAT SMART 621 655
IPR003107 HAT SMART 693 728
IPR003107 HAT SMART 64 96
IPR003107 HAT SMART 287 322
IPR003107 HAT SMART 582 616
IPR003107 HAT SMART 450 486
IPR002885 Pentatricopeptide_rpt Pfam 276 298
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 110 217

No CAZYmes available for this sequence

No external refs found!