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  5. Zm00001d022405_T051

Zm00001d022405_T051


Description : chromatin remodeling 5


Gene families : OG_01_0002357 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002357_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d022405_T051
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d022405_T051
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_81
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_24


Type GO Term Name Evidence Source
MF GO:0005524 ATP binding ISM GOs from InterProScan
MF GO:0140658 ATP-dependent chromatin remodeler activity ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR038718 SNF2-like_sf Gene3D 581 820
IPR001650 Helicase_C ProSiteProfiles 909 1060
IPR016197 Chromo-like_dom_sf SUPERFAMILY 382 465
IPR025260 CHD1-like_C SMART 1487 1591
IPR014001 Helicase_ATP-bd ProSiteProfiles 602 774
IPR027417 P-loop_NTPase SUPERFAMILY 814 1098
IPR009057 Homeobox-like_sf SUPERFAMILY 1315 1377
IPR023780 Chromo_domain Pfam 499 553
IPR025260 CHD1-like_C Pfam 1497 1589
IPR027417 P-loop_NTPase Gene3D 821 1050
IPR000953 Chromo/chromo_shadow_dom SMART 383 466
IPR000953 Chromo/chromo_shadow_dom SMART 496 555
IPR000953 Chromo/chromo_shadow_dom ProSiteProfiles 498 562
IPR001650 Helicase_C Pfam 906 1019
IPR014001 Helicase_ATP-bd SMART 586 786
IPR027417 P-loop_NTPase SUPERFAMILY 578 811
IPR016197 Chromo-like_dom_sf SUPERFAMILY 477 553
IPR001650 Helicase_C SMART 935 1019
IPR000953 Chromo/chromo_shadow_dom ProSiteProfiles 385 473
IPR000330 SNF2_N Pfam 593 877
IPR000953 Chromo/chromo_shadow_dom ProSiteProfiles 385 473
IPR025260 CHD1-like_C Pfam 1497 1590
IPR000953 Chromo/chromo_shadow_dom SMART 383 466
IPR000953 Chromo/chromo_shadow_dom SMART 496 555
IPR009057 Homeobox-like_sf SUPERFAMILY 1315 1377
IPR016197 Chromo-like_dom_sf SUPERFAMILY 477 553
IPR014001 Helicase_ATP-bd SMART 586 786
IPR025260 CHD1-like_C SMART 1487 1591
IPR027417 P-loop_NTPase SUPERFAMILY 578 811
IPR000330 SNF2_N Pfam 609 878
IPR027417 P-loop_NTPase SUPERFAMILY 814 1098
IPR000953 Chromo/chromo_shadow_dom ProSiteProfiles 498 562
IPR038718 SNF2-like_sf Gene3D 581 820
IPR023780 Chromo_domain Pfam 499 553
IPR016197 Chromo-like_dom_sf SUPERFAMILY 382 465
IPR001650 Helicase_C SMART 935 1019
IPR014001 Helicase_ATP-bd ProSiteProfiles 602 774
IPR001650 Helicase_C ProSiteProfiles 909 1060
IPR001650 Helicase_C Pfam 907 1019
IPR027417 P-loop_NTPase Gene3D 821 1050

No CAZYmes available for this sequence

No external refs found!