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  5. Zm00001d023218_T064

Zm00001d023218_T064


Description : Clathrin, heavy chain


Gene families : OG_01_0001847 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001847_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d023218_T064
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d023218_T064
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_127
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_58


Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity ISM GOs from InterProScan
MF GO:0005515 protein binding ISM GOs from InterProScan
BP GO:0006886 intracellular protein transport ISM GOs from InterProScan
BP GO:0016192 vesicle-mediated transport ISM GOs from InterProScan
CC GO:0030130 clathrin coat of trans-Golgi network vesicle ISM GOs from InterProScan
CC GO:0030132 clathrin coat of coated pit ISM GOs from InterProScan
MF GO:0032051 clathrin light chain binding ISM GOs from InterProScan
CC GO:0071439 clathrin complex ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011990 TPR-like_helical_dom_sf Gene3D 913 1068
IPR011990 TPR-like_helical_dom_sf Gene3D 1069 1208
IPR011990 TPR-like_helical_dom_sf Gene3D 1209 1548
IPR000547 Clathrin_H-chain/VPS_repeat ProSiteProfiles 1154 1295
IPR016025 Clathrin_H-chain_N SUPERFAMILY 5 355
IPR015348 Clathrin_H-chain_linker_core Pfam 356 379
IPR000547 Clathrin_H-chain/VPS_repeat ProSiteProfiles 1005 1150
IPR016024 ARM-type_fold SUPERFAMILY 1208 1543
IPR000547 Clathrin_H-chain/VPS_repeat Pfam 1157 1293
IPR000547 Clathrin_H-chain/VPS_repeat Pfam 569 704
IPR000547 Clathrin_H-chain/VPS_repeat Pfam 1301 1443
IPR000547 Clathrin_H-chain/VPS_repeat Pfam 713 852
IPR000547 Clathrin_H-chain/VPS_repeat Pfam 862 996
IPR000547 Clathrin_H-chain/VPS_repeat Pfam 1451 1591
IPR000547 Clathrin_H-chain/VPS_repeat Pfam 1005 1143
IPR000547 Clathrin_H-chain/VPS_repeat ProSiteProfiles 859 998
IPR016024 ARM-type_fold SUPERFAMILY 913 1078
IPR016024 ARM-type_fold SUPERFAMILY 357 512
IPR016024 ARM-type_fold SUPERFAMILY 1064 1207
IPR016341 Clathrin_heavy_chain PIRSF 3 1702
IPR016024 ARM-type_fold SUPERFAMILY 469 805
IPR000547 Clathrin_H-chain/VPS_repeat ProSiteProfiles 1449 1592
IPR000547 Clathrin_H-chain/VPS_repeat ProSiteProfiles 563 709
IPR000547 Clathrin_H-chain/VPS_repeat ProSiteProfiles 712 854
IPR022365 Clathrin_H-chain_propeller_rpt Pfam 155 197
IPR022365 Clathrin_H-chain_propeller_rpt Pfam 208 247
IPR016025 Clathrin_H-chain_N Gene3D 1 389
IPR000547 Clathrin_H-chain/VPS_repeat ProSiteProfiles 1300 1446
IPR000547 Clathrin_H-chain/VPS_repeat SMART 563 705
IPR000547 Clathrin_H-chain/VPS_repeat SMART 1300 1446
IPR000547 Clathrin_H-chain/VPS_repeat SMART 1449 1608
IPR000547 Clathrin_H-chain/VPS_repeat SMART 1005 1150
IPR000547 Clathrin_H-chain/VPS_repeat SMART 712 854
IPR000547 Clathrin_H-chain/VPS_repeat SMART 859 998
IPR000547 Clathrin_H-chain/VPS_repeat SMART 1154 1295
IPR016025 Clathrin_H-chain_N SUPERFAMILY 5 355
IPR022365 Clathrin_H-chain_propeller_rpt Pfam 154 197
IPR022365 Clathrin_H-chain_propeller_rpt Pfam 208 247
IPR000547 Clathrin_H-chain/VPS_repeat ProSiteProfiles 1154 1295
IPR016025 Clathrin_H-chain_N Gene3D 1 389
IPR000547 Clathrin_H-chain/VPS_repeat ProSiteProfiles 859 998
IPR016341 Clathrin_heavy_chain PIRSF 3 1702
IPR016024 ARM-type_fold SUPERFAMILY 357 512
IPR000547 Clathrin_H-chain/VPS_repeat ProSiteProfiles 563 709
IPR016024 ARM-type_fold SUPERFAMILY 469 805
IPR015348 Clathrin_H-chain_linker_core Pfam 356 379
IPR011990 TPR-like_helical_dom_sf Gene3D 913 1068
IPR011990 TPR-like_helical_dom_sf Gene3D 1069 1208
IPR011990 TPR-like_helical_dom_sf Gene3D 1209 1548
IPR000547 Clathrin_H-chain/VPS_repeat ProSiteProfiles 712 854
IPR016024 ARM-type_fold SUPERFAMILY 913 1078
IPR000547 Clathrin_H-chain/VPS_repeat ProSiteProfiles 1300 1446
IPR000547 Clathrin_H-chain/VPS_repeat ProSiteProfiles 1005 1150
IPR000547 Clathrin_H-chain/VPS_repeat Pfam 713 852
IPR000547 Clathrin_H-chain/VPS_repeat Pfam 1452 1591
IPR000547 Clathrin_H-chain/VPS_repeat Pfam 862 995
IPR000547 Clathrin_H-chain/VPS_repeat Pfam 1301 1443
IPR000547 Clathrin_H-chain/VPS_repeat Pfam 569 702
IPR000547 Clathrin_H-chain/VPS_repeat Pfam 1005 1143
IPR000547 Clathrin_H-chain/VPS_repeat Pfam 1159 1293
IPR016024 ARM-type_fold SUPERFAMILY 1208 1543
IPR016024 ARM-type_fold SUPERFAMILY 1064 1207
IPR000547 Clathrin_H-chain/VPS_repeat ProSiteProfiles 1449 1592
IPR000547 Clathrin_H-chain/VPS_repeat SMART 563 705
IPR000547 Clathrin_H-chain/VPS_repeat SMART 1300 1446
IPR000547 Clathrin_H-chain/VPS_repeat SMART 1449 1608
IPR000547 Clathrin_H-chain/VPS_repeat SMART 1005 1150
IPR000547 Clathrin_H-chain/VPS_repeat SMART 859 998
IPR000547 Clathrin_H-chain/VPS_repeat SMART 712 854
IPR000547 Clathrin_H-chain/VPS_repeat SMART 1154 1295

No CAZYmes available for this sequence

No external refs found!