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  5. Zm00001d023260_T001

Zm00001d023260_T001


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG_01_0007011 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007011_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d023260_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d023260_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_206
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_133


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000504 RRM_dom ProSiteProfiles 266 343
IPR000504 RRM_dom SMART 173 249
IPR000504 RRM_dom SMART 97 166
IPR000504 RRM_dom SMART 267 339
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 17 172
IPR000504 RRM_dom ProSiteProfiles 172 253
IPR000504 RRM_dom Pfam 174 237
IPR000504 RRM_dom Pfam 98 164
IPR000504 RRM_dom Pfam 268 334
IPR035979 RBD_domain_sf SUPERFAMILY 91 171
IPR035979 RBD_domain_sf SUPERFAMILY 263 355
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 173 252
IPR000504 RRM_dom ProSiteProfiles 96 170
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 254 372
IPR035979 RBD_domain_sf SUPERFAMILY 171 256
IPR035979 RBD_domain_sf SUPERFAMILY 171 256
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 173 252
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 254 372
IPR000504 RRM_dom ProSiteProfiles 96 170
IPR000504 RRM_dom SMART 173 249
IPR000504 RRM_dom SMART 97 166
IPR000504 RRM_dom SMART 267 339
IPR035979 RBD_domain_sf SUPERFAMILY 263 355
IPR035979 RBD_domain_sf SUPERFAMILY 91 171
IPR000504 RRM_dom Pfam 98 164
IPR000504 RRM_dom Pfam 268 334
IPR000504 RRM_dom Pfam 174 237
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 17 172
IPR000504 RRM_dom ProSiteProfiles 266 343
IPR000504 RRM_dom ProSiteProfiles 172 253

No CAZYmes available for this sequence

No external refs found!