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  5. Zm00001d023795_T006

Zm00001d023795_T006


Description : ubiquitin-protein ligase 1


Gene families : OG_01_0010979 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0010979_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d023795_T006
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d023795_T006
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_81
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_141


Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity ISM GOs from InterProScan
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000569 HECT_dom Pfam 3331 3641
IPR009060 UBA-like_sf SUPERFAMILY 1281 1347
IPR015940 UBA SMART 1300 1338
IPR035983 Hect_E3_ubiquitin_ligase SUPERFAMILY 3267 3634
IPR003903 UIM_dom ProSiteProfiles 1345 1364
IPR010309 E3_Ub_ligase_DUF908 Pfam 113 196
IPR010309 E3_Ub_ligase_DUF908 Pfam 253 416
IPR000569 HECT_dom ProSiteProfiles 3301 3642
IPR025527 HUWE1/Rev1_UBM Pfam 2640 2670
IPR025527 HUWE1/Rev1_UBM Pfam 2600 2631
IPR025527 HUWE1/Rev1_UBM Pfam 2562 2590
IPR000569 HECT_dom CDD 3281 3640
IPR010314 E3_Ub_ligase_DUF913 Pfam 479 804
IPR011989 ARM-like Gene3D 334 887
IPR015940 UBA ProSiteProfiles 1298 1339
IPR015940 UBA Pfam 1299 1336
IPR016024 ARM-type_fold SUPERFAMILY 120 605
IPR000569 HECT_dom SMART 3299 3642
IPR015940 UBA Pfam 1299 1336
IPR000569 HECT_dom CDD 3281 3640
IPR010314 E3_Ub_ligase_DUF913 Pfam 479 804
IPR000569 HECT_dom Pfam 3332 3641
IPR003903 UIM_dom ProSiteProfiles 1345 1364
IPR016024 ARM-type_fold SUPERFAMILY 120 605
IPR035983 Hect_E3_ubiquitin_ligase SUPERFAMILY 3267 3634
IPR010309 E3_Ub_ligase_DUF908 Pfam 113 416
IPR015940 UBA SMART 1300 1338
IPR000569 HECT_dom SMART 3299 3642
IPR025527 HUWE1/Rev1_UBM Pfam 2601 2630
IPR025527 HUWE1/Rev1_UBM Pfam 2639 2670
IPR025527 HUWE1/Rev1_UBM Pfam 2562 2588
IPR011989 ARM-like Gene3D 334 887
IPR015940 UBA ProSiteProfiles 1298 1339
IPR000569 HECT_dom ProSiteProfiles 3301 3642
IPR009060 UBA-like_sf SUPERFAMILY 1281 1347

No CAZYmes available for this sequence

No external refs found!