Zm00001d023974_T001

Description : Putative endonuclease or glycosyl hydrolase

Gene families : OG_01_0010478 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0010478_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d023974_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d023974_T001
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_185
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_199

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004540	RNA nuclease activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005777	peroxisome	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	ISM	GOs from InterProScan
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0030371	translation repressor activity	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0042579	microbody	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0045182	translation regulator activity	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1903231	mRNA base-pairing translational repressor activity	ISM	GOs from InterProScan

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR025605	OST-HTH/LOTUS_dom	Pfam	313	379
IPR025605	OST-HTH/LOTUS_dom	Pfam	450	513
IPR025605	OST-HTH/LOTUS_dom	ProSiteProfiles	447	521
IPR024768	Marf1	PANTHER	34	494
IPR021139	NYN	Pfam	45	182
IPR041966	LOTUS-like	Gene3D	445	514
IPR041966	LOTUS-like	Gene3D	311	381
IPR025605	OST-HTH/LOTUS_dom	ProSiteProfiles	311	383
IPR041966	LOTUS-like	Gene3D	445	514
IPR041966	LOTUS-like	Gene3D	311	381
IPR025605	OST-HTH/LOTUS_dom	ProSiteProfiles	311	383
IPR024768	Marf1	PANTHER	23	517
IPR025605	OST-HTH/LOTUS_dom	ProSiteProfiles	447	521
IPR025605	OST-HTH/LOTUS_dom	Pfam	448	512
IPR025605	OST-HTH/LOTUS_dom	Pfam	312	379
IPR021139	NYN	Pfam	44	185

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d023974_T001

Expression Profile

Co-expression Networks

Functional Annotation