Zm00001d024158_T003

Description : Transducin/WD40 repeat-like superfamily protein

Gene families : OG_01_0000013 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000013_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d024158_T003
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d024158_T003
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_166
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_272

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006405	RNA export from nucleus	None	Extended
BP	GO:0006406	mRNA export from nucleus	ISM	GOs from InterProScan
BP	GO:0006810	transport	None	Extended
BP	GO:0006913	nucleocytoplasmic transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015931	nucleobase-containing compound transport	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0050657	nucleic acid transport	None	Extended
BP	GO:0050658	RNA transport	None	Extended
BP	GO:0051028	mRNA transport	None	Extended
BP	GO:0051168	nuclear export	None	Extended
BP	GO:0051169	nuclear transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051236	establishment of RNA localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR001680	WD40_rpt	ProSiteProfiles	20	53
IPR000477	RT_dom	Pfam	845	938
IPR036322	WD40_repeat_dom_sf	SUPERFAMILY	20	278
IPR001680	WD40_rpt	SMART	57	95
IPR001680	WD40_rpt	SMART	98	137
IPR001680	WD40_rpt	SMART	13	52
IPR001680	WD40_rpt	SMART	225	269
IPR043502	DNA/RNA_pol_sf	SUPERFAMILY	777	933
IPR036691	Endo/exonu/phosph_ase_sf	Gene3D	348	560
IPR015943	WD40/YVTN_repeat-like_dom_sf	Gene3D	5	287
IPR001680	WD40_rpt	ProSiteProfiles	244	278
IPR001680	WD40_rpt	ProSiteProfiles	105	146
IPR001680	WD40_rpt	Pfam	230	269
IPR001680	WD40_rpt	Pfam	64	94
IPR001680	WD40_rpt	Pfam	104	137
IPR001680	WD40_rpt	Pfam	24	51
IPR001680	WD40_rpt	ProSiteProfiles	63	104
IPR036691	Endo/exonu/phosph_ase_sf	SUPERFAMILY	359	559
IPR043502	DNA/RNA_pol_sf	SUPERFAMILY	777	933
IPR001680	WD40_rpt	ProSiteProfiles	244	278
IPR001680	WD40_rpt	ProSiteProfiles	105	146
IPR001680	WD40_rpt	ProSiteProfiles	20	53
IPR001680	WD40_rpt	ProSiteProfiles	63	104
IPR000477	RT_dom	Pfam	844	939
IPR015943	WD40/YVTN_repeat-like_dom_sf	Gene3D	5	287
IPR001680	WD40_rpt	Pfam	108	137
IPR001680	WD40_rpt	Pfam	26	51
IPR001680	WD40_rpt	Pfam	230	269
IPR001680	WD40_rpt	Pfam	65	94
IPR001680	WD40_rpt	SMART	57	95
IPR001680	WD40_rpt	SMART	98	137
IPR001680	WD40_rpt	SMART	225	269
IPR001680	WD40_rpt	SMART	13	52
IPR036322	WD40_repeat_dom_sf	SUPERFAMILY	20	278
IPR036691	Endo/exonu/phosph_ase_sf	Gene3D	348	560
IPR036691	Endo/exonu/phosph_ase_sf	SUPERFAMILY	359	559

No CAZYmes available for this sequence

External Links

No external refs found!