1. Home
  2. Species
  3. Zea mays
  4. Sequence
  5. Zm00001d024248_T001

Zm00001d024248_T001


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0007426 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007426_tree

Sequence : cds (download), rna (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d024248_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d024248_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_4
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_133


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 384 418
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 314 348
IPR002885 Pentatricopeptide_rpt Pfam 387 416
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 247 281
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 174 208
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 139 173
IPR002885 Pentatricopeptide_rpt Pfam 302 360
IPR002885 Pentatricopeptide_rpt Pfam 161 220
IPR011990 TPR-like_helical_dom_sf Gene3D 293 398
IPR011990 TPR-like_helical_dom_sf Gene3D 399 513
IPR011990 TPR-like_helical_dom_sf Gene3D 54 223
IPR011990 TPR-like_helical_dom_sf Gene3D 224 292
IPR002885 Pentatricopeptide_rpt Pfam 418 464
IPR002885 Pentatricopeptide_rpt Pfam 246 290
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 454 488
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 316 479
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 349 383
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 114 309
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 419 453
IPR002885 Pentatricopeptide_rpt NCBIfam 145 174
IPR002885 Pentatricopeptide_rpt NCBIfam 457 489
IPR002885 Pentatricopeptide_rpt NCBIfam 352 384
IPR002885 Pentatricopeptide_rpt NCBIfam 316 349
IPR002885 Pentatricopeptide_rpt NCBIfam 178 209
IPR002885 Pentatricopeptide_rpt NCBIfam 387 420
IPR002885 Pentatricopeptide_rpt NCBIfam 250 282
IPR002885 Pentatricopeptide_rpt NCBIfam 421 454
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 349 383
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 454 488
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 419 453
IPR002885 Pentatricopeptide_rpt Pfam 161 220
IPR002885 Pentatricopeptide_rpt Pfam 302 360
IPR002885 Pentatricopeptide_rpt Pfam 372 430
IPR002885 Pentatricopeptide_rpt Pfam 240 291
IPR002885 Pentatricopeptide_rpt TIGRFAM 316 349
IPR002885 Pentatricopeptide_rpt TIGRFAM 145 174
IPR002885 Pentatricopeptide_rpt TIGRFAM 387 420
IPR002885 Pentatricopeptide_rpt TIGRFAM 178 209
IPR002885 Pentatricopeptide_rpt TIGRFAM 352 384
IPR002885 Pentatricopeptide_rpt TIGRFAM 421 454
IPR002885 Pentatricopeptide_rpt TIGRFAM 457 489
IPR002885 Pentatricopeptide_rpt TIGRFAM 250 282
IPR002885 Pentatricopeptide_rpt Pfam 457 485
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 174 208
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 139 173
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 247 281
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 316 479
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 114 309
IPR011990 TPR-like_helical_dom_sf Gene3D 293 398
IPR011990 TPR-like_helical_dom_sf Gene3D 399 513
IPR011990 TPR-like_helical_dom_sf Gene3D 54 223
IPR011990 TPR-like_helical_dom_sf Gene3D 224 292
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 384 418
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 314 348

No CAZYmes available for this sequence

No external refs found!