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  5. Zm00001d024272_T001

Zm00001d024272_T001


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0000807 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000807_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d024272_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d024272_T001 No neighbors in network
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_133


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 767 801
IPR002885 Pentatricopeptide_rpt NCBIfam 769 803
IPR002885 Pentatricopeptide_rpt NCBIfam 155 186
IPR002885 Pentatricopeptide_rpt NCBIfam 580 613
IPR002885 Pentatricopeptide_rpt NCBIfam 735 768
IPR002885 Pentatricopeptide_rpt NCBIfam 336 368
IPR002885 Pentatricopeptide_rpt NCBIfam 648 682
IPR002885 Pentatricopeptide_rpt NCBIfam 225 257
IPR002885 Pentatricopeptide_rpt NCBIfam 300 322
IPR002885 Pentatricopeptide_rpt NCBIfam 404 437
IPR002885 Pentatricopeptide_rpt NCBIfam 614 644
IPR002885 Pentatricopeptide_rpt NCBIfam 474 507
IPR002885 Pentatricopeptide_rpt NCBIfam 441 473
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 646 680
IPR011990 TPR-like_helical_dom_sf Gene3D 386 535
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 612 642
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 507 541
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 297 331
IPR002885 Pentatricopeptide_rpt Pfam 298 345
IPR002885 Pentatricopeptide_rpt Pfam 221 269
IPR002885 Pentatricopeptide_rpt Pfam 436 484
IPR002885 Pentatricopeptide_rpt Pfam 646 693
IPR002885 Pentatricopeptide_rpt Pfam 577 624
IPR002885 Pentatricopeptide_rpt Pfam 731 779
IPR002885 Pentatricopeptide_rpt Pfam 546 571
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 332 366
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 221 255
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 402 436
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 732 766
IPR011990 TPR-like_helical_dom_sf Gene3D 713 821
IPR011990 TPR-like_helical_dom_sf Gene3D 607 712
IPR011990 TPR-like_helical_dom_sf Gene3D 285 385
IPR011990 TPR-like_helical_dom_sf Gene3D 217 284
IPR002885 Pentatricopeptide_rpt Pfam 398 429
IPR002885 Pentatricopeptide_rpt Pfam 503 532
IPR011990 TPR-like_helical_dom_sf Gene3D 536 606
IPR011990 TPR-like_helical_dom_sf Gene3D 37 216
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 577 611
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 437 471
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 472 506
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 332 366
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 221 255
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 402 436
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 612 642
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 437 471
IPR002885 Pentatricopeptide_rpt TIGRFAM 300 322
IPR002885 Pentatricopeptide_rpt TIGRFAM 404 437
IPR002885 Pentatricopeptide_rpt TIGRFAM 441 473
IPR002885 Pentatricopeptide_rpt TIGRFAM 769 803
IPR002885 Pentatricopeptide_rpt TIGRFAM 474 507
IPR002885 Pentatricopeptide_rpt TIGRFAM 648 682
IPR002885 Pentatricopeptide_rpt TIGRFAM 336 368
IPR002885 Pentatricopeptide_rpt TIGRFAM 580 613
IPR002885 Pentatricopeptide_rpt TIGRFAM 735 768
IPR002885 Pentatricopeptide_rpt TIGRFAM 155 186
IPR002885 Pentatricopeptide_rpt TIGRFAM 225 257
IPR002885 Pentatricopeptide_rpt TIGRFAM 614 644
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 472 506
IPR011990 TPR-like_helical_dom_sf Gene3D 713 821
IPR011990 TPR-like_helical_dom_sf Gene3D 607 712
IPR011990 TPR-like_helical_dom_sf Gene3D 285 385
IPR011990 TPR-like_helical_dom_sf Gene3D 217 284
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 577 611
IPR011990 TPR-like_helical_dom_sf Gene3D 536 606
IPR011990 TPR-like_helical_dom_sf Gene3D 37 216
IPR002885 Pentatricopeptide_rpt Pfam 546 571
IPR002885 Pentatricopeptide_rpt Pfam 225 252
IPR002885 Pentatricopeptide_rpt Pfam 577 625
IPR002885 Pentatricopeptide_rpt Pfam 731 780
IPR002885 Pentatricopeptide_rpt Pfam 646 692
IPR002885 Pentatricopeptide_rpt Pfam 299 345
IPR002885 Pentatricopeptide_rpt Pfam 436 484
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 767 801
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 507 541
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 297 331
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 732 766
IPR002885 Pentatricopeptide_rpt Pfam 398 429
IPR002885 Pentatricopeptide_rpt Pfam 503 532
IPR011990 TPR-like_helical_dom_sf Gene3D 386 535
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 646 680

No CAZYmes available for this sequence

No external refs found!