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  5. Zm00001d024523_T003

Zm00001d024523_T003


Description : Transducin family protein / WD-40 repeat family protein


Gene families : OG_01_0000290 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000290_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d024523_T003
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d024523_T003
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_104
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_263


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
BP GO:0006355 regulation of DNA-templated transcription ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR006594 LisH ProSiteProfiles 4 36
IPR048419 Topless_Znf Pfam 164 204
IPR011047 Quinoprotein_ADH-like_supfam SUPERFAMILY 451 1063
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 750 1082
IPR001680 WD40_rpt SMART 485 526
IPR001680 WD40_rpt SMART 835 877
IPR001680 WD40_rpt SMART 529 572
IPR001680 WD40_rpt SMART 1013 1055
IPR001680 WD40_rpt SMART 880 920
IPR001680 WD40_rpt SMART 575 615
IPR001680 WD40_rpt SMART 923 962
IPR001680 WD40_rpt SMART 441 482
IPR001680 WD40_rpt SMART 335 374
IPR001680 WD40_rpt SMART 395 435
IPR006594 LisH SMART 4 36
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 989 1118
IPR006595 CTLH_C ProSiteProfiles 34 92
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 309 535
IPR001680 WD40_rpt Pfam 445 482
IPR001680 WD40_rpt Pfam 928 962
IPR001680 WD40_rpt Pfam 487 525
IPR001680 WD40_rpt ProSiteProfiles 448 491
IPR006595 CTLH_C SMART 34 92
IPR001680 WD40_rpt ProSiteProfiles 930 971
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 540 693
IPR027728 Topless_fam PANTHER 1 1127
IPR019775 WD40_repeat_CS ProSitePatterns 469 483
IPR001680 WD40_rpt Pfam 929 962
IPR001680 WD40_rpt Pfam 445 482
IPR001680 WD40_rpt ProSiteProfiles 448 491
IPR019775 WD40_repeat_CS ProSitePatterns 469 483
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 989 1118
IPR001680 WD40_rpt ProSiteProfiles 930 971
IPR011047 Quinoprotein_ADH-like_supfam SUPERFAMILY 451 1063
IPR006595 CTLH_C ProSiteProfiles 34 92
IPR001680 WD40_rpt SMART 485 526
IPR001680 WD40_rpt SMART 529 572
IPR001680 WD40_rpt SMART 835 877
IPR001680 WD40_rpt SMART 880 920
IPR001680 WD40_rpt SMART 1013 1055
IPR001680 WD40_rpt SMART 923 962
IPR001680 WD40_rpt SMART 575 615
IPR001680 WD40_rpt SMART 441 482
IPR001680 WD40_rpt SMART 335 374
IPR001680 WD40_rpt SMART 395 435
IPR027728 Topless_fam PANTHER 1 1139
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 750 1082
IPR006594 LisH SMART 4 36
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 540 693
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 309 535
IPR006595 CTLH_C SMART 34 92
IPR006594 LisH ProSiteProfiles 4 36

No CAZYmes available for this sequence

No external refs found!