Zm00001d024593_T001

Description : Small nuclear ribonucleoprotein family protein

Gene families : OG_01_0001539 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001539_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d024593_T001	No neighbors in network
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d024593_T001
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_132

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR001163	Sm_dom_euk/arc	SMART	5	65
IPR010920	LSM_dom_sf	SUPERFAMILY	3	55
IPR001163	Sm_dom_euk/arc	Pfam	6	51
IPR016654	U6_snRNA_Lsm2	CDD	2	62
IPR047575	Sm	ProSiteProfiles	2	80
IPR016654	U6_snRNA_Lsm2	PANTHER	2	62
IPR016654	U6_snRNA_Lsm2	PANTHER	1	67
IPR016654	U6_snRNA_Lsm2	CDD	2	62
IPR010920	LSM_dom_sf	SUPERFAMILY	3	55
IPR001163	Sm_dom_euk/arc	SMART	5	65
IPR001163	Sm_dom_euk/arc	Pfam	7	51

No CAZYmes available for this sequence

External Links

No external refs found!