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  5. Zm00001d024600_T002

Zm00001d024600_T002


Description : ATP binding cassette subfamily B1


Gene families : OG_01_0011937 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011937_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d024600_T002
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d024600_T002
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_28
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_184


Type GO Term Name Evidence Source
MF GO:0005524 ATP binding ISM GOs from InterProScan
BP GO:0055085 transmembrane transport ISM GOs from InterProScan
MF GO:0140359 ABC-type transporter activity ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR027417 P-loop_NTPase Gene3D 1007 1263
IPR036640 ABC1_TM_sf SUPERFAMILY 679 992
IPR036640 ABC1_TM_sf Gene3D 47 972
IPR011527 ABC1_TM_dom Pfam 60 333
IPR011527 ABC1_TM_dom Pfam 698 956
IPR003439 ABC_transporter-like_ATP-bd ProSiteProfiles 1012 1256
IPR003593 AAA+_ATPase SMART 1039 1227
IPR003593 AAA+_ATPase SMART 409 595
IPR027417 P-loop_NTPase SUPERFAMILY 1009 1258
IPR011527 ABC1_TM_dom ProSiteProfiles 60 348
IPR036640 ABC1_TM_sf SUPERFAMILY 47 533
IPR003439 ABC_transporter-like_ATP-bd Pfam 1030 1179
IPR017871 ABC_transporter-like_CS ProSitePatterns 1151 1165
IPR003439 ABC_transporter-like_ATP-bd Pfam 400 549
IPR003439 ABC_transporter-like_ATP-bd ProSiteProfiles 382 618
IPR011527 ABC1_TM_dom ProSiteProfiles 693 977
IPR017871 ABC_transporter-like_CS ProSitePatterns 521 535
IPR027417 P-loop_NTPase Gene3D 372 620
IPR039421 Type_1_exporter PANTHER 23 636
IPR027417 P-loop_NTPase SUPERFAMILY 373 619
IPR011527 ABC1_TM_dom Pfam 60 333
IPR011527 ABC1_TM_dom Pfam 698 958
IPR036640 ABC1_TM_sf Gene3D 47 972
IPR027417 P-loop_NTPase Gene3D 372 620
IPR003439 ABC_transporter-like_ATP-bd ProSiteProfiles 1012 1256
IPR036640 ABC1_TM_sf SUPERFAMILY 679 992
IPR017871 ABC_transporter-like_CS ProSitePatterns 1151 1165
IPR039421 Type_1_exporter PANTHER 32 1261
IPR003593 AAA+_ATPase SMART 1039 1227
IPR003593 AAA+_ATPase SMART 409 595
IPR011527 ABC1_TM_dom ProSiteProfiles 60 348
IPR003439 ABC_transporter-like_ATP-bd Pfam 400 549
IPR027417 P-loop_NTPase SUPERFAMILY 373 619
IPR027417 P-loop_NTPase Gene3D 1007 1263
IPR017871 ABC_transporter-like_CS ProSitePatterns 521 535
IPR003439 ABC_transporter-like_ATP-bd ProSiteProfiles 382 618
IPR003439 ABC_transporter-like_ATP-bd Pfam 1030 1179
IPR036640 ABC1_TM_sf SUPERFAMILY 47 533
IPR011527 ABC1_TM_dom ProSiteProfiles 693 977
IPR027417 P-loop_NTPase SUPERFAMILY 1009 1258

No CAZYmes available for this sequence

No external refs found!