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  5. Zm00001d025034_T001

Zm00001d025034_T001


Description : pumilio 3


Gene families : OG_01_0010522 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0010522_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d025034_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d025034_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_165
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_271


Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 637 672
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 502 523
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 601 636
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 685 721
IPR001313 Pumilio_RNA-bd_rpt SMART 686 721
IPR001313 Pumilio_RNA-bd_rpt SMART 502 538
IPR001313 Pumilio_RNA-bd_rpt SMART 601 636
IPR001313 Pumilio_RNA-bd_rpt SMART 430 465
IPR001313 Pumilio_RNA-bd_rpt SMART 637 672
IPR001313 Pumilio_RNA-bd_rpt SMART 466 501
IPR001313 Pumilio_RNA-bd_rpt SMART 564 600
IPR001313 Pumilio_RNA-bd_rpt SMART 539 563
IPR001313 Pumilio_RNA-bd_rpt Pfam 434 468
IPR001313 Pumilio_RNA-bd_rpt Pfam 693 723
IPR001313 Pumilio_RNA-bd_rpt Pfam 532 561
IPR001313 Pumilio_RNA-bd_rpt Pfam 649 675
IPR001313 Pumilio_RNA-bd_rpt Pfam 612 638
IPR001313 Pumilio_RNA-bd_rpt Pfam 506 523
IPR001313 Pumilio_RNA-bd_rpt Pfam 472 503
IPR001313 Pumilio_RNA-bd_rpt Pfam 568 596
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 528 563
IPR016024 ARM-type_fold SUPERFAMILY 416 744
IPR011989 ARM-like Gene3D 409 752
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 466 501
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 430 465
IPR033133 PUM-HD ProSiteProfiles 409 747
IPR033712 Pumilio_RNA-bd CDD 431 743
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 564 600
IPR033133 PUM-HD ProSiteProfiles 409 747
IPR016024 ARM-type_fold SUPERFAMILY 416 744
IPR001313 Pumilio_RNA-bd_rpt SMART 686 721
IPR001313 Pumilio_RNA-bd_rpt SMART 502 538
IPR001313 Pumilio_RNA-bd_rpt SMART 601 636
IPR001313 Pumilio_RNA-bd_rpt SMART 430 465
IPR001313 Pumilio_RNA-bd_rpt SMART 637 672
IPR001313 Pumilio_RNA-bd_rpt SMART 466 501
IPR001313 Pumilio_RNA-bd_rpt SMART 564 600
IPR001313 Pumilio_RNA-bd_rpt SMART 539 563
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 564 600
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 430 465
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 466 501
IPR033712 Pumilio_RNA-bd CDD 431 743
IPR001313 Pumilio_RNA-bd_rpt Pfam 537 563
IPR001313 Pumilio_RNA-bd_rpt Pfam 693 723
IPR001313 Pumilio_RNA-bd_rpt Pfam 568 602
IPR001313 Pumilio_RNA-bd_rpt Pfam 506 523
IPR001313 Pumilio_RNA-bd_rpt Pfam 641 675
IPR001313 Pumilio_RNA-bd_rpt Pfam 612 638
IPR001313 Pumilio_RNA-bd_rpt Pfam 472 502
IPR001313 Pumilio_RNA-bd_rpt Pfam 434 468
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 601 636
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 502 523
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 528 563
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 685 721
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 637 672
IPR011989 ARM-like Gene3D 409 752

No CAZYmes available for this sequence

No external refs found!