Zm00001d025160_T001

Description : Ribosomal L29 family protein

Gene families : OG_01_0006984 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006984_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d025160_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d025160_T001
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_305
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_215

Type	GO Term	Name	Evidence	Source
BP	GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	ISM	GOs from InterProScan
BP	GO:0000470	maturation of LSU-rRNA	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISM	GOs from InterProScan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006412	translation	ISM	GOs from InterProScan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015934	large ribosomal subunit	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0022625	cytosolic large ribosomal subunit	ISM	GOs from InterProScan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR001854	Ribosomal_uL29	CDD	8	64
IPR045059	Ribosomal_uL29_euk	PANTHER	1	123
IPR001854	Ribosomal_uL29	NCBIfam	8	64
IPR001854	Ribosomal_uL29	Hamap	4	64
IPR036049	Ribosomal_uL29_sf	Gene3D	1	77
IPR036049	Ribosomal_uL29_sf	SUPERFAMILY	4	65
IPR001854	Ribosomal_uL29	Pfam	8	64
IPR001854	Ribosomal_uL29	TIGRFAM	8	64
IPR036049	Ribosomal_uL29_sf	Gene3D	1	77
IPR001854	Ribosomal_uL29	Pfam	8	64
IPR045059	Ribosomal_uL29_euk	PANTHER	1	123
IPR036049	Ribosomal_uL29_sf	SUPERFAMILY	4	65
IPR001854	Ribosomal_uL29	Hamap	4	64

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d025160_T001

Expression Profile

Co-expression Networks

Functional Annotation