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  5. Zm00001d025165_T001

Zm00001d025165_T001


Description : Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain


Gene families : OG_01_0006563 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006563_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d025165_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d025165_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_255
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_90


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR032710 NTF2-like_dom_sf SUPERFAMILY 24 194
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 363 469
IPR000504 RRM_dom SMART 379 451
IPR002075 NTF2_dom Pfam 28 61
IPR002075 NTF2_dom Pfam 123 193
IPR039539 Ras_GTPase_bind_prot PANTHER 17 461
IPR000504 RRM_dom Pfam 380 438
IPR035979 RBD_domain_sf SUPERFAMILY 362 461
IPR018222 Nuclear_transport_factor_2_euk ProSiteProfiles 28 193
IPR000504 RRM_dom ProSiteProfiles 378 455
IPR018222 Nuclear_transport_factor_2_euk CDD 26 194
IPR018222 Nuclear_transport_factor_2_euk ProSiteProfiles 28 193
IPR000504 RRM_dom SMART 379 451
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 363 469
IPR002075 NTF2_dom Pfam 28 61
IPR002075 NTF2_dom Pfam 124 193
IPR000504 RRM_dom ProSiteProfiles 378 455
IPR039539 Ras_GTPase_bind_prot PANTHER 10 76
IPR035979 RBD_domain_sf SUPERFAMILY 362 461
IPR032710 NTF2-like_dom_sf SUPERFAMILY 24 194
IPR018222 Nuclear_transport_factor_2_euk CDD 26 194
IPR039539 Ras_GTPase_bind_prot PANTHER 122 468
IPR000504 RRM_dom Pfam 380 438

No CAZYmes available for this sequence

No external refs found!