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  5. Zm00001d025235_T004

Zm00001d025235_T004


Description : Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains


Gene families : OG_01_0002259 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002259_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d025235_T004
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d025235_T004
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_279
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_135


Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISM GOs from InterProScan
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000048 IQ_motif_EF-hand-BS Pfam 858 876
IPR000048 IQ_motif_EF-hand-BS Pfam 880 900
IPR005559 CG-1_dom Pfam 13 126
IPR036770 Ankyrin_rpt-contain_sf Gene3D 536 742
IPR000048 IQ_motif_EF-hand-BS ProSiteProfiles 879 907
IPR000048 IQ_motif_EF-hand-BS ProSiteProfiles 798 827
IPR000048 IQ_motif_EF-hand-BS SMART 878 900
IPR000048 IQ_motif_EF-hand-BS SMART 797 819
IPR000048 IQ_motif_EF-hand-BS SMART 857 877
IPR000048 IQ_motif_EF-hand-BS ProSiteProfiles 856 885
IPR005559 CG-1_dom ProSiteProfiles 7 133
IPR002110 Ankyrin_rpt ProSiteProfiles 677 709
IPR005559 CG-1_dom SMART 10 128
IPR027417 P-loop_NTPase SUPERFAMILY 833 903
IPR036770 Ankyrin_rpt-contain_sf SUPERFAMILY 478 738
IPR002110 Ankyrin_rpt SMART 677 706
IPR002110 Ankyrin_rpt Pfam 655 737
IPR013783 Ig-like_fold Gene3D 442 535
IPR002909 IPT_dom Pfam 449 519
IPR002110 Ankyrin_rpt ProSiteProfiles 677 709
IPR036770 Ankyrin_rpt-contain_sf SUPERFAMILY 478 738
IPR000048 IQ_motif_EF-hand-BS SMART 878 900
IPR000048 IQ_motif_EF-hand-BS SMART 797 819
IPR000048 IQ_motif_EF-hand-BS SMART 857 877
IPR002110 Ankyrin_rpt SMART 677 706
IPR000048 IQ_motif_EF-hand-BS ProSiteProfiles 879 907
IPR000048 IQ_motif_EF-hand-BS ProSiteProfiles 798 827
IPR002110 Ankyrin_rpt Pfam 664 737
IPR013783 Ig-like_fold Gene3D 442 535
IPR036770 Ankyrin_rpt-contain_sf Gene3D 536 742
IPR005559 CG-1_dom SMART 10 128
IPR000048 IQ_motif_EF-hand-BS Pfam 880 900
IPR000048 IQ_motif_EF-hand-BS Pfam 858 876
IPR005559 CG-1_dom Pfam 13 126
IPR027417 P-loop_NTPase SUPERFAMILY 833 903
IPR002909 IPT_dom Pfam 449 521
IPR005559 CG-1_dom ProSiteProfiles 7 133
IPR000048 IQ_motif_EF-hand-BS ProSiteProfiles 856 885

No CAZYmes available for this sequence

No external refs found!