Zm00001d025380_T001

Description : Tetratricopeptide repeat (TPR)-like superfamily protein

Gene families : OG_01_0014398 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0014398_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d025380_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d025380_T001
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_222
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_9

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	216	250
IPR046848	E_motif	Pfam	391	450
IPR001841	Znf_RING	ProSiteProfiles	583	625
IPR001841	Znf_RING	Pfam	582	625
IPR011990	TPR-like_helical_dom_sf	Gene3D	356	482
IPR011990	TPR-like_helical_dom_sf	Gene3D	125	276
IPR002885	Pentatricopeptide_rpt	NCBIfam	319	345
IPR002885	Pentatricopeptide_rpt	NCBIfam	218	251
IPR002885	Pentatricopeptide_rpt	Pfam	216	262
IPR001841	Znf_RING	SMART	583	624
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	317	347
IPR013083	Znf_RING/FYVE/PHD	Gene3D	546	629
IPR002885	Pentatricopeptide_rpt	Pfam	291	314
IPR002885	Pentatricopeptide_rpt	Pfam	319	345
IPR011990	TPR-like_helical_dom_sf	Gene3D	277	355
IPR011990	TPR-like_helical_dom_sf	Gene3D	356	482
IPR011990	TPR-like_helical_dom_sf	Gene3D	125	276
IPR045215	PPR_prot_At1g15510	PANTHER	357	469
IPR045215	PPR_prot_At1g15510	PANTHER	19	359
IPR013083	Znf_RING/FYVE/PHD	Gene3D	546	629
IPR001841	Znf_RING	ProSiteProfiles	583	625
IPR002885	Pentatricopeptide_rpt	Pfam	319	345
IPR002885	Pentatricopeptide_rpt	Pfam	291	314
IPR011990	TPR-like_helical_dom_sf	Gene3D	277	355
IPR002885	Pentatricopeptide_rpt	Pfam	215	262
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	216	250
IPR001841	Znf_RING	SMART	583	624
IPR002885	Pentatricopeptide_rpt	TIGRFAM	319	345
IPR002885	Pentatricopeptide_rpt	TIGRFAM	218	251
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	317	347
IPR001841	Znf_RING	Pfam	582	625

No CAZYmes available for this sequence

External Links

No external refs found!