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  5. Zm00001d025753_T001

Zm00001d025753_T001


Description : homolog of carrot EP3-3 chitinase


Gene families : OG_01_0002667 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002667_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d025753_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d025753_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_36
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_640


Type GO Term Name Evidence Source
MF GO:0004568 chitinase activity ISM GOs from InterProScan
BP GO:0005975 carbohydrate metabolic process ISM GOs from InterProScan
BP GO:0006032 chitin catabolic process ISM GOs from InterProScan
MF GO:0008061 chitin binding ISM GOs from InterProScan
BP GO:0016998 cell wall macromolecule catabolic process ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000726 Glyco_hydro_19_cat Pfam 85 227
IPR000726 Glyco_hydro_19_cat Pfam 234 281
IPR018371 Chitin-binding_1_CS ProSitePatterns 38 57
IPR016283 Glyco_hydro_19 PIRSF 8 281
IPR036861 Endochitinase-like_sf SUPERFAMILY 33 67
IPR001002 Chitin-bd_1 ProSiteProfiles 33 68
IPR001002 Chitin-bd_1 PRINTS 51 58
IPR001002 Chitin-bd_1 PRINTS 36 44
IPR001002 Chitin-bd_1 PRINTS 44 51
IPR000726 Glyco_hydro_19_cat ProSitePatterns 215 225
IPR001002 Chitin-bd_1 SMART 35 66
IPR000726 Glyco_hydro_19_cat ProSitePatterns 101 123
IPR023346 Lysozyme-like_dom_sf SUPERFAMILY 80 281
IPR036861 Endochitinase-like_sf Gene3D 28 68
IPR001002 Chitin-bd_1 Pfam 33 66
IPR036861 Endochitinase-like_sf SUPERFAMILY 33 67
IPR036861 Endochitinase-like_sf Gene3D 28 68
IPR000726 Glyco_hydro_19_cat ProSitePatterns 215 225
IPR001002 Chitin-bd_1 PRINTS 51 58
IPR001002 Chitin-bd_1 PRINTS 36 44
IPR001002 Chitin-bd_1 PRINTS 44 51
IPR018371 Chitin-binding_1_CS ProSitePatterns 38 57
IPR001002 Chitin-bd_1 SMART 35 66
IPR001002 Chitin-bd_1 Pfam 33 66
IPR016283 Glyco_hydro_19 PIRSF 8 281
IPR000726 Glyco_hydro_19_cat ProSitePatterns 101 123
IPR001002 Chitin-bd_1 ProSiteProfiles 33 68
IPR000726 Glyco_hydro_19_cat Pfam 234 281
IPR000726 Glyco_hydro_19_cat Pfam 85 227
IPR023346 Lysozyme-like_dom_sf SUPERFAMILY 80 281
HMM Family HMM Length Query Length e-Value Query Start Query End
CBM18 38 282 2e-12 32 66
GH19 231 282 1.9e-75 81 281
No external refs found!