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  5. Zm00001d026346_T002

Zm00001d026346_T002


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG_01_0008061 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008061_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d026346_T002 No neighbors in network
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d026346_T002
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_257


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 85 164
IPR035979 RBD_domain_sf SUPERFAMILY 168 261
IPR000504 RRM_dom ProSiteProfiles 176 255
IPR000504 RRM_dom SMART 87 160
IPR000504 RRM_dom SMART 283 350
IPR000504 RRM_dom SMART 177 251
IPR035979 RBD_domain_sf SUPERFAMILY 267 383
IPR000504 RRM_dom ProSiteProfiles 282 354
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 266 397
IPR035979 RBD_domain_sf SUPERFAMILY 52 167
IPR000504 RRM_dom ProSiteProfiles 86 166
IPR000504 RRM_dom Pfam 178 247
IPR000504 RRM_dom Pfam 88 154
IPR000504 RRM_dom Pfam 284 346
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 165 265
IPR035979 RBD_domain_sf SUPERFAMILY 267 383
IPR000504 RRM_dom SMART 87 160
IPR000504 RRM_dom SMART 177 251
IPR000504 RRM_dom SMART 283 350
IPR000504 RRM_dom Pfam 284 346
IPR000504 RRM_dom Pfam 178 247
IPR000504 RRM_dom Pfam 88 154
IPR035979 RBD_domain_sf SUPERFAMILY 52 167
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 85 164
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 165 265
IPR000504 RRM_dom ProSiteProfiles 176 255
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 266 397
IPR000504 RRM_dom ProSiteProfiles 86 166
IPR035979 RBD_domain_sf SUPERFAMILY 168 261
IPR000504 RRM_dom ProSiteProfiles 282 354

No CAZYmes available for this sequence

No external refs found!