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  5. Zm00001d026621_T006

Zm00001d026621_T006


Description : Transducin/WD40 repeat-like superfamily protein


Gene families : OG_01_0004100 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004100_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d026621_T006
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d026621_T006
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_222
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_170


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
MF GO:0008017 microtubule binding ISM GOs from InterProScan
CC GO:0008352 katanin complex ISM GOs from InterProScan
BP GO:0051013 microtubule severing ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR020472 G-protein_beta_WD-40_rep PRINTS 118 132
IPR020472 G-protein_beta_WD-40_rep PRINTS 160 174
IPR020472 G-protein_beta_WD-40_rep PRINTS 202 216
IPR001680 WD40_rpt ProSiteProfiles 141 182
IPR001680 WD40_rpt ProSiteProfiles 14 56
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 6 293
IPR019775 WD40_repeat_CS ProSitePatterns 160 174
IPR001680 WD40_rpt ProSiteProfiles 99 140
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 133 183
IPR001680 WD40_rpt ProSiteProfiles 57 98
IPR019775 WD40_repeat_CS ProSitePatterns 202 216
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 184 328
IPR001680 WD40_rpt Pfam 136 173
IPR001680 WD40_rpt Pfam 53 89
IPR001680 WD40_rpt Pfam 94 131
IPR001680 WD40_rpt Pfam 177 215
IPR001680 WD40_rpt Pfam 11 46
IPR001680 WD40_rpt ProSiteProfiles 183 224
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 2 132
IPR028021 Katanin_C-terminal Pfam 748 903
IPR001680 WD40_rpt SMART 50 89
IPR001680 WD40_rpt SMART 218 256
IPR001680 WD40_rpt SMART 176 215
IPR001680 WD40_rpt SMART 92 131
IPR001680 WD40_rpt SMART 134 173
IPR001680 WD40_rpt SMART 7 47
IPR026962 KTNB1 Hamap 3 908
IPR026962 KTNB1 Hamap 3 908
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 184 328
IPR001680 WD40_rpt Pfam 95 131
IPR001680 WD40_rpt Pfam 11 46
IPR001680 WD40_rpt Pfam 136 173
IPR001680 WD40_rpt Pfam 177 215
IPR001680 WD40_rpt Pfam 54 89
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 6 293
IPR001680 WD40_rpt ProSiteProfiles 183 224
IPR001680 WD40_rpt ProSiteProfiles 99 140
IPR019775 WD40_repeat_CS ProSitePatterns 160 174
IPR001680 WD40_rpt ProSiteProfiles 14 56
IPR001680 WD40_rpt ProSiteProfiles 141 182
IPR028021 Katanin_C-terminal Pfam 748 903
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 133 183
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 2 132
IPR019775 WD40_repeat_CS ProSitePatterns 202 216
IPR020472 G-protein_beta_WD-40_rep PRINTS 118 132
IPR020472 G-protein_beta_WD-40_rep PRINTS 160 174
IPR020472 G-protein_beta_WD-40_rep PRINTS 202 216
IPR001680 WD40_rpt SMART 218 256
IPR001680 WD40_rpt SMART 50 89
IPR001680 WD40_rpt SMART 176 215
IPR001680 WD40_rpt SMART 92 131
IPR001680 WD40_rpt SMART 134 173
IPR001680 WD40_rpt SMART 7 47
IPR001680 WD40_rpt ProSiteProfiles 57 98

No CAZYmes available for this sequence

No external refs found!