Zm00001d026652_T001

Description : AT hook motif DNA-binding family protein

Gene families : OG_01_0005382 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005382_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d026652_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d026652_T001
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_634
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_125

Type	GO Term	Name	Evidence	Source
MF	GO:0000217	DNA secondary structure binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0003680	minor groove of adenine-thymine-rich DNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR017956	AT_hook_DNA-bd_motif	SMART	109	121
IPR017956	AT_hook_DNA-bd_motif	SMART	155	167
IPR005175	PPC_dom	ProSiteProfiles	183	347
IPR039605	AHL	PANTHER	85	362
IPR005175	PPC_dom	CDD	187	321
IPR005175	PPC_dom	Pfam	188	322
IPR005175	PPC_dom	CDD	187	321
IPR005175	PPC_dom	Pfam	188	322
IPR039605	AHL	PANTHER	64	382
IPR017956	AT_hook_DNA-bd_motif	SMART	109	121
IPR017956	AT_hook_DNA-bd_motif	SMART	155	167
IPR005175	PPC_dom	ProSiteProfiles	183	347

No CAZYmes available for this sequence

External Links

No external refs found!