Zm00001d027259_T010

Description : tRNA/rRNA methyltransferase (SpoU) family protein

Gene families : OG_01_0004805 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004805_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d027259_T010
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d027259_T010
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_114
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_263

Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	ISM	GOs from InterProScan
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006400	tRNA modification	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008033	tRNA processing	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	None	Extended
MF	GO:0008173	RNA methyltransferase activity	ISM	GOs from InterProScan
MF	GO:0008175	tRNA methyltransferase activity	None	Extended
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016423	tRNA (guanine) methyltransferase activity	ISM	GOs from InterProScan
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0030488	tRNA methylation	ISM	GOs from InterProScan
BP	GO:0032259	methylation	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR045330	Trm3/TARBP1	PANTHER	9	1819
IPR029028	Alpha/beta_knot_MTases	SUPERFAMILY	1655	1818
IPR044748	Trm3/TARBP1_C	CDD	1669	1813
IPR001537	SpoU_MeTrfase	Pfam	1669	1810
IPR029026	tRNA_m1G_MTases_N	Gene3D	1651	1821
IPR016024	ARM-type_fold	SUPERFAMILY	327	1642
IPR045330	Trm3/TARBP1	PANTHER	8	1820
IPR044748	Trm3/TARBP1_C	CDD	1669	1813
IPR001537	SpoU_MeTrfase	Pfam	1669	1810
IPR029026	tRNA_m1G_MTases_N	Gene3D	1651	1821
IPR029028	Alpha/beta_knot_MTases	SUPERFAMILY	1655	1818
IPR016024	ARM-type_fold	SUPERFAMILY	327	1642

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d027259_T010

Expression Profile

Co-expression Networks

Functional Annotation