Zm00001d027412_T004

Description : dicer-like 1

Gene families : OG_01_0001206 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001206_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d027412_T004
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d027412_T004
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_157
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_184

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	RNA endonuclease activity	None	Extended
MF	GO:0004525	ribonuclease III activity	ISM	GOs from InterProScan
MF	GO:0004540	RNA nuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	ISM	GOs from InterProScan
BP	GO:0006401	RNA catabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
BP	GO:0016075	rRNA catabolic process	ISM	GOs from InterProScan
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016891	RNA endonuclease activity, producing 5'-phosphomonoesters	ISM	GOs from InterProScan
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034655	nucleobase-containing compound catabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0034661	ncRNA catabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044270	cellular nitrogen compound catabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046700	heterocycle catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR003100	PAZ_dom	ProSiteProfiles	1231	1345
IPR000999	RNase_III_dom	Pfam	1402	1549
IPR000999	RNase_III_dom	Pfam	1624	1737
IPR011907	RNase_III	Hamap	1592	1821
IPR027417	P-loop_NTPase	Gene3D	664	830
IPR036389	RNase_III_sf	Gene3D	1583	1757
IPR036389	RNase_III_sf	Gene3D	1367	1561
IPR036389	RNase_III_sf	SUPERFAMILY	1361	1567
IPR014001	Helicase_ATP-bd	ProSiteProfiles	281	458
IPR027417	P-loop_NTPase	SUPERFAMILY	321	800
IPR027417	P-loop_NTPase	Gene3D	269	512
IPR000999	RNase_III_dom	CDD	1386	1559
IPR005034	Dicer_dimerisation_dom	ProSiteProfiles	866	961
IPR036085	PAZ_dom_sf	SUPERFAMILY	1217	1345
IPR014720	dsRBD_dom	Pfam	1764	1821
IPR000999	RNase_III_dom	ProSiteProfiles	1589	1737
IPR000999	RNase_III_dom	ProSiteProfiles	1388	1549
IPR003100	PAZ_dom	SMART	1210	1369
IPR038248	Dicer_dimer_sf	Gene3D	861	961
IPR014720	dsRBD_dom	ProSiteProfiles	1847	1922
IPR000999	RNase_III_dom	SMART	1384	1569
IPR000999	RNase_III_dom	SMART	1604	1760
IPR011545	DEAD/DEAH_box_helicase_dom	Pfam	276	440
IPR036389	RNase_III_sf	SUPERFAMILY	1583	1756
IPR000999	RNase_III_dom	CDD	1605	1760
IPR005034	Dicer_dimerisation_dom	Pfam	866	954
IPR001650	Helicase_C	SMART	707	793
IPR014720	dsRBD_dom	SMART	1764	1825
IPR014720	dsRBD_dom	SMART	1848	1921
IPR014720	dsRBD_dom	ProSiteProfiles	1763	1826
IPR001650	Helicase_C	Pfam	675	791
IPR001650	Helicase_C	ProSiteProfiles	678	838
IPR014001	Helicase_ATP-bd	SMART	270	473
IPR003100	PAZ_dom	Pfam	1230	1363
IPR000999	RNase_III_dom	ProSitePatterns	1624	1632
IPR000999	RNase_III_dom	ProSitePatterns	1624	1632
IPR001650	Helicase_C	SMART	707	793
IPR000999	RNase_III_dom	ProSiteProfiles	1388	1549
IPR036389	RNase_III_sf	SUPERFAMILY	1361	1567
IPR014720	dsRBD_dom	ProSiteProfiles	1847	1922
IPR003100	PAZ_dom	SMART	1210	1369
IPR000999	RNase_III_dom	Pfam	1624	1737
IPR000999	RNase_III_dom	Pfam	1402	1549
IPR001650	Helicase_C	ProSiteProfiles	678	838
IPR000999	RNase_III_dom	SMART	1384	1569
IPR000999	RNase_III_dom	SMART	1604	1760
IPR001650	Helicase_C	Pfam	676	791
IPR027417	P-loop_NTPase	SUPERFAMILY	321	800
IPR014720	dsRBD_dom	SMART	1764	1825
IPR014720	dsRBD_dom	SMART	1848	1921
IPR036085	PAZ_dom_sf	SUPERFAMILY	1217	1345
IPR027417	P-loop_NTPase	Gene3D	269	512
IPR000999	RNase_III_dom	CDD	1605	1760
IPR036389	RNase_III_sf	SUPERFAMILY	1583	1756
IPR014001	Helicase_ATP-bd	ProSiteProfiles	281	458
IPR000999	RNase_III_dom	CDD	1386	1559
IPR038248	Dicer_dimer_sf	Gene3D	861	961
IPR027417	P-loop_NTPase	Gene3D	664	830
IPR014720	dsRBD_dom	ProSiteProfiles	1763	1826
IPR003100	PAZ_dom	Pfam	1220	1365
IPR036389	RNase_III_sf	Gene3D	1583	1757
IPR036389	RNase_III_sf	Gene3D	1367	1561
IPR005034	Dicer_dimerisation_dom	ProSiteProfiles	866	961
IPR000999	RNase_III_dom	ProSiteProfiles	1589	1737
IPR014001	Helicase_ATP-bd	SMART	270	473
IPR011907	RNase_III	Hamap	1592	1821
IPR003100	PAZ_dom	ProSiteProfiles	1231	1345
IPR011545	DEAD/DEAH_box_helicase_dom	Pfam	276	439

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d027412_T004

Expression Profile

Co-expression Networks

Functional Annotation