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  5. Zm00001d027441_T001

Zm00001d027441_T001


Description : Pectin lyase-like superfamily protein


Gene families : OG_01_0001834 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001834_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d027441_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d027441_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_161
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_230


Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity ISM GOs from InterProScan
BP GO:0005975 carbohydrate metabolic process ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011050 Pectin_lyase_fold/virulence SUPERFAMILY 36 437
IPR000743 Glyco_hydro_28 Pfam 140 423
IPR012334 Pectin_lyas_fold Gene3D 40 433
IPR006626 PbH1 SMART 212 238
IPR006626 PbH1 SMART 239 260
IPR006626 PbH1 SMART 212 238
IPR006626 PbH1 SMART 239 260
IPR000743 Glyco_hydro_28 Pfam 134 423
IPR011050 Pectin_lyase_fold/virulence SUPERFAMILY 36 437
IPR012334 Pectin_lyas_fold Gene3D 40 433
HMM Family HMM Length Query Length e-Value Query Start Query End
GH28 325 464 9.1e-76 79 425
No external refs found!