Zm00001d027566_T001

Description : NOP56-like pre RNA processing ribonucleoprotein

Gene families : OG_01_0001165 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001165_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d027566_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d027566_T001	No neighbors in network
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_83

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003743	translation initiation factor activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005732	sno(s)RNA-containing ribonucleoprotein complex	None	Extended
BP	GO:0006413	translational initiation	ISM	GOs from InterProScan
MF	GO:0008135	translation factor activity, RNA binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0030515	snoRNA binding	ISM	GOs from InterProScan
CC	GO:0030684	preribosome	None	Extended
CC	GO:0031428	box C/D RNP complex	ISM	GOs from InterProScan
CC	GO:0032040	small-subunit processome	ISM	GOs from InterProScan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
MF	GO:0045182	translation regulator activity	None	Extended
MF	GO:0090079	translation regulator activity, nucleic acid binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR029175	EXOC2/Sec5	PANTHER	176	236
IPR036070	Nop_dom_sf	SUPERFAMILY	2	61
IPR001950	SUI1	ProSiteProfiles	132	177
IPR001950	SUI1	Pfam	131	177
IPR042239	Nop_C	Gene3D	1	75
IPR002687	Nop_dom	Pfam	2	57
IPR036877	SUI1_dom_sf	SUPERFAMILY	131	177
IPR001950	SUI1	ProSiteProfiles	132	177
IPR036070	Nop_dom_sf	SUPERFAMILY	2	61
IPR002687	Nop_dom	Pfam	3	53
IPR036877	SUI1_dom_sf	SUPERFAMILY	131	177
IPR042239	Nop_C	Gene3D	1	75
IPR001950	SUI1	Pfam	131	177
IPR045056	Nop56/Nop58	PANTHER	2	226

No CAZYmes available for this sequence

External Links

No external refs found!