Zm00001d027568_T001

Description : tubulin beta-5 chain

Gene families : OG_01_0773605 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): No tree available for this family

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d027568_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d027568_T001
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_161
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_165

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	ISM	GOs from InterProScan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005200	structural constituent of cytoskeleton	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	ISM	GOs from InterProScan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005874	microtubule	ISM	GOs from InterProScan
BP	GO:0007017	microtubule-based process	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0099080	supramolecular complex	None	Extended
CC	GO:0099081	supramolecular polymer	None	Extended
CC	GO:0099512	supramolecular fiber	None	Extended
CC	GO:0099513	polymeric cytoskeletal fiber	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR000217	Tubulin	PANTHER	111	199
IPR003008	Tubulin_FtsZ_GTPase	Pfam	110	198
IPR036525	Tubulin/FtsZ_GTPase_sf	Gene3D	86	203
IPR036525	Tubulin/FtsZ_GTPase_sf	SUPERFAMILY	103	198
IPR000217	Tubulin	PRINTS	174	198
IPR000217	Tubulin	PRINTS	119	138
IPR000217	Tubulin	PRINTS	161	172
IPR002453	Beta_tubulin	PRINTS	176	194
IPR002453	Beta_tubulin	PRINTS	109	126
IPR002453	Beta_tubulin	PRINTS	156	167
IPR000217	Tubulin	PRINTS	174	198
IPR000217	Tubulin	PRINTS	119	138
IPR000217	Tubulin	PRINTS	161	172
IPR002453	Beta_tubulin	PRINTS	176	194
IPR002453	Beta_tubulin	PRINTS	109	126
IPR002453	Beta_tubulin	PRINTS	156	167
IPR036525	Tubulin/FtsZ_GTPase_sf	SUPERFAMILY	103	198
IPR036525	Tubulin/FtsZ_GTPase_sf	Gene3D	86	203
IPR000217	Tubulin	PANTHER	102	198
IPR003008	Tubulin_FtsZ_GTPase	Pfam	108	198

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d027568_T001

Expression Profile

Co-expression Networks

Functional Annotation