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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0005444 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005444_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d027835_T001 | |
| Neighborhood | Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d027835_T001 | |
| Cluster | Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_240 | |
| Cluster | Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_122 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 809 | 843 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 844 | 878 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 1 | 74 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 634 | 668 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 82 | 116 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 220 | 394 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 395 | 598 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 739 | 904 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 75 | 163 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 599 | 737 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 117 | 151 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 812 | 839 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 675 | 700 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 849 | 875 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 777 | 802 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 81 | 130 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 774 | 808 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 675 | 702 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 848 | 879 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 85 | 117 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 120 | 149 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 81 | 130 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 1 | 74 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 220 | 394 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 395 | 598 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 739 | 904 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 844 | 878 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 809 | 843 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 675 | 700 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 849 | 875 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 812 | 839 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 777 | 802 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 774 | 808 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 634 | 668 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 599 | 737 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 117 | 151 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 82 | 116 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 848 | 879 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 85 | 117 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 120 | 149 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 675 | 702 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 75 | 163 |
No CAZYmes available for this sequence
| No external refs found! |