Zm00001d027937_T013

Description : Pentatricopeptide repeat (PPR) superfamily protein

Gene families : OG_01_0016619 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0016619_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d027937_T013
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d027937_T013
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_6
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_202

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR011990	TPR-like_helical_dom_sf	Gene3D	782	966
IPR011990	TPR-like_helical_dom_sf	Gene3D	133	260
IPR045215	PPR_prot_At1g15510	PANTHER	643	925
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	305	339
IPR008545	Web	Pfam	1278	1827
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	406	440
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	204	238
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	706	740
IPR002885	Pentatricopeptide_rpt	NCBIfam	307	340
IPR002885	Pentatricopeptide_rpt	NCBIfam	409	442
IPR002885	Pentatricopeptide_rpt	NCBIfam	206	240
IPR002885	Pentatricopeptide_rpt	NCBIfam	809	842
IPR002885	Pentatricopeptide_rpt	NCBIfam	708	742
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	608	642
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	807	841
IPR011990	TPR-like_helical_dom_sf	Gene3D	261	355
IPR011990	TPR-like_helical_dom_sf	Gene3D	661	781
IPR011990	TPR-like_helical_dom_sf	Gene3D	357	459
IPR011990	TPR-like_helical_dom_sf	Gene3D	460	564
IPR011990	TPR-like_helical_dom_sf	Gene3D	565	660
IPR002885	Pentatricopeptide_rpt	Pfam	509	535
IPR002885	Pentatricopeptide_rpt	Pfam	882	905
IPR002885	Pentatricopeptide_rpt	Pfam	206	235
IPR002885	Pentatricopeptide_rpt	Pfam	307	333
IPR002885	Pentatricopeptide_rpt	Pfam	178	203
IPR002885	Pentatricopeptide_rpt	Pfam	709	734
IPR002885	Pentatricopeptide_rpt	Pfam	406	452
IPR002885	Pentatricopeptide_rpt	Pfam	806	855
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	204	238
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	608	642
IPR045215	PPR_prot_At1g15510	PANTHER	788	951
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	406	440
IPR011990	TPR-like_helical_dom_sf	Gene3D	261	355
IPR011990	TPR-like_helical_dom_sf	Gene3D	661	781
IPR011990	TPR-like_helical_dom_sf	Gene3D	357	459
IPR011990	TPR-like_helical_dom_sf	Gene3D	460	564
IPR011990	TPR-like_helical_dom_sf	Gene3D	565	660
IPR002885	Pentatricopeptide_rpt	Pfam	406	452
IPR002885	Pentatricopeptide_rpt	Pfam	806	854
IPR002885	Pentatricopeptide_rpt	Pfam	204	250
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	305	339
IPR002885	Pentatricopeptide_rpt	TIGRFAM	809	842
IPR002885	Pentatricopeptide_rpt	TIGRFAM	307	340
IPR002885	Pentatricopeptide_rpt	TIGRFAM	409	442
IPR002885	Pentatricopeptide_rpt	TIGRFAM	708	742
IPR002885	Pentatricopeptide_rpt	TIGRFAM	206	240
IPR045215	PPR_prot_At1g15510	PANTHER	658	785
IPR002885	Pentatricopeptide_rpt	Pfam	307	333
IPR002885	Pentatricopeptide_rpt	Pfam	178	203
IPR002885	Pentatricopeptide_rpt	Pfam	882	905
IPR002885	Pentatricopeptide_rpt	Pfam	509	535
IPR002885	Pentatricopeptide_rpt	Pfam	709	734
IPR045215	PPR_prot_At1g15510	PANTHER	336	434
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	807	841
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	706	740
IPR008545	Web	Pfam	1278	1827
IPR045215	PPR_prot_At1g15510	PANTHER	430	594
IPR011990	TPR-like_helical_dom_sf	Gene3D	782	966
IPR011990	TPR-like_helical_dom_sf	Gene3D	133	260
IPR045215	PPR_prot_At1g15510	PANTHER	56	334
IPR045215	PPR_prot_At1g15510	PANTHER	595	656

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d027937_T013

Expression Profile

Co-expression Networks

Functional Annotation