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  5. Zm00001d028080_T001

Zm00001d028080_T001


Description : Actin-like ATPase superfamily protein


Gene families : OG_01_0015007 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0015007_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d028080_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d028080_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_101
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_161


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR043129 ATPase_NBD SUPERFAMILY 294 425
IPR011990 TPR-like_helical_dom_sf Gene3D 91 192
IPR011990 TPR-like_helical_dom_sf Gene3D 193 289
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 19 53
IPR000905 Gcp-like_dom Pfam 303 425
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 121 155
IPR002885 Pentatricopeptide_rpt Pfam 227 272
IPR002885 Pentatricopeptide_rpt Pfam 122 169
IPR002885 Pentatricopeptide_rpt Pfam 19 62
IPR011990 TPR-like_helical_dom_sf Gene3D 1 83
IPR002885 Pentatricopeptide_rpt NCBIfam 21 55
IPR002885 Pentatricopeptide_rpt NCBIfam 228 260
IPR002885 Pentatricopeptide_rpt NCBIfam 125 156
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 225 259
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 156 190
IPR002885 Pentatricopeptide_rpt Pfam 198 221
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 225 259
IPR011990 TPR-like_helical_dom_sf Gene3D 1 83
IPR011990 TPR-like_helical_dom_sf Gene3D 91 192
IPR011990 TPR-like_helical_dom_sf Gene3D 193 289
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 121 155
IPR043129 ATPase_NBD SUPERFAMILY 294 425
IPR002885 Pentatricopeptide_rpt Pfam 19 62
IPR002885 Pentatricopeptide_rpt Pfam 227 273
IPR002885 Pentatricopeptide_rpt Pfam 122 169
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 156 190
IPR000905 Gcp-like_dom Pfam 303 425
IPR002885 Pentatricopeptide_rpt Pfam 198 221
IPR002885 Pentatricopeptide_rpt TIGRFAM 21 55
IPR002885 Pentatricopeptide_rpt TIGRFAM 228 260
IPR002885 Pentatricopeptide_rpt TIGRFAM 125 156
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 19 53

No CAZYmes available for this sequence

No external refs found!