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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0013771 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0013771_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d028107_T001 | |
| Neighborhood | Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d028107_T001 | No neighbors in network |
| Cluster | Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_165 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 137 | 287 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 208 | 242 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 515 | 549 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 243 | 277 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 550 | 584 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 410 | 444 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 404 | 470 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 544 | 616 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 471 | 543 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 445 | 479 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 305 | 339 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 585 | 619 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 517 | 550 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 412 | 445 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 483 | 516 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 659 | 691 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 377 | 411 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 245 | 278 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 448 | 480 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 552 | 586 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 342 | 376 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 307 | 341 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 205 | 235 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 300 | 332 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 340 | 374 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 480 | 514 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 288 | 403 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 375 | 409 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 653 | 712 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 656 | 690 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 339 | 388 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 479 | 527 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 409 | 457 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 657 | 704 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 550 | 597 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 242 | 285 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 340 | 374 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 137 | 287 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 404 | 470 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 471 | 543 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 544 | 616 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 375 | 409 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 210 | 244 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 552 | 586 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 342 | 376 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 377 | 411 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 412 | 445 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 307 | 341 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 659 | 691 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 448 | 480 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 245 | 278 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 483 | 516 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 517 | 550 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 656 | 690 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 585 | 619 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 653 | 712 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 445 | 479 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 480 | 514 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 288 | 403 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 550 | 584 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 658 | 703 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 409 | 457 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 479 | 527 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 339 | 388 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 242 | 285 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 550 | 596 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 205 | 235 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 300 | 332 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 208 | 242 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 243 | 277 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 305 | 339 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 410 | 444 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 515 | 549 |
No CAZYmes available for this sequence
| No external refs found! |