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  5. Zm00001d028175_T001

Zm00001d028175_T001


Description : pumilio 1


Gene families : OG_01_0040836 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0040836_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d028175_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d028175_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_10
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_94


Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 280 318
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 244 279
IPR001313 Pumilio_RNA-bd_rpt SMART 323 361
IPR001313 Pumilio_RNA-bd_rpt SMART 280 315
IPR001313 Pumilio_RNA-bd_rpt SMART 244 279
IPR011989 ARM-like Gene3D 70 392
IPR001313 Pumilio_RNA-bd_rpt Pfam 285 302
IPR001313 Pumilio_RNA-bd_rpt Pfam 251 273
IPR033133 PUM-HD ProSiteProfiles 37 387
IPR016024 ARM-type_fold SUPERFAMILY 93 380
IPR016024 ARM-type_fold SUPERFAMILY 93 380
IPR033133 PUM-HD ProSiteProfiles 37 387
IPR001313 Pumilio_RNA-bd_rpt SMART 323 361
IPR001313 Pumilio_RNA-bd_rpt SMART 280 315
IPR001313 Pumilio_RNA-bd_rpt SMART 244 279
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 280 318
IPR011989 ARM-like Gene3D 70 392
IPR001313 Pumilio_RNA-bd_rpt Pfam 285 302
IPR001313 Pumilio_RNA-bd_rpt Pfam 251 272
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 244 279

No CAZYmes available for this sequence

No external refs found!