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  5. Zm00001d028221_T001

Zm00001d028221_T001


Description : pentatricopeptide (PPR) repeat-containing protein


Gene families : OG_01_0015670 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0015670_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d028221_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d028221_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_147
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_125


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 233 267
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 303 337
IPR011990 TPR-like_helical_dom_sf Gene3D 139 297
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 373 403
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 198 232
IPR002885 Pentatricopeptide_rpt NCBIfam 166 198
IPR002885 Pentatricopeptide_rpt NCBIfam 450 481
IPR002885 Pentatricopeptide_rpt NCBIfam 376 402
IPR002885 Pentatricopeptide_rpt NCBIfam 236 268
IPR002885 Pentatricopeptide_rpt NCBIfam 270 303
IPR002885 Pentatricopeptide_rpt NCBIfam 201 233
IPR002885 Pentatricopeptide_rpt NCBIfam 341 368
IPR002885 Pentatricopeptide_rpt NCBIfam 414 447
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 411 445
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 446 480
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 338 372
IPR002625 Smr_dom ProSiteProfiles 592 677
IPR033443 PPR_long Pfam 357 498
IPR002885 Pentatricopeptide_rpt Pfam 269 314
IPR002885 Pentatricopeptide_rpt Pfam 163 208
IPR011990 TPR-like_helical_dom_sf Gene3D 389 502
IPR011990 TPR-like_helical_dom_sf Gene3D 298 388
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 163 197
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 268 302
IPR002885 Pentatricopeptide_rpt Pfam 236 259
IPR002625 Smr_dom SMART 589 680
IPR002625 Smr_dom ProSiteProfiles 592 677
IPR002885 Pentatricopeptide_rpt Pfam 163 208
IPR002885 Pentatricopeptide_rpt Pfam 269 314
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 338 372
IPR002885 Pentatricopeptide_rpt TIGRFAM 236 268
IPR002885 Pentatricopeptide_rpt TIGRFAM 341 368
IPR002885 Pentatricopeptide_rpt TIGRFAM 450 481
IPR002885 Pentatricopeptide_rpt TIGRFAM 270 303
IPR002885 Pentatricopeptide_rpt TIGRFAM 376 402
IPR002885 Pentatricopeptide_rpt TIGRFAM 414 447
IPR002885 Pentatricopeptide_rpt TIGRFAM 166 198
IPR002885 Pentatricopeptide_rpt TIGRFAM 201 233
IPR002885 Pentatricopeptide_rpt Pfam 236 259
IPR011990 TPR-like_helical_dom_sf Gene3D 139 297
IPR033443 PPR_long Pfam 357 499
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 373 403
IPR011990 TPR-like_helical_dom_sf Gene3D 389 502
IPR011990 TPR-like_helical_dom_sf Gene3D 298 388
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 268 302
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 163 197
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 198 232
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 233 267
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 303 337
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 411 445
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 446 480
IPR002625 Smr_dom SMART 589 680

No CAZYmes available for this sequence

No external refs found!