Zm00001d028490_T001

Description : HCP-like superfamily protein

Gene families : OG_01_0006074 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006074_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d028490_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d028490_T001
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_242
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_197

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010243	response to organonitrogen compound	None	Extended
BP	GO:0010498	proteasomal protein catabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0030163	protein catabolic process	None	Extended
BP	GO:0030433	ubiquitin-dependent ERAD pathway	ISM	GOs from InterProScan
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034976	response to endoplasmic reticulum stress	None	Extended
BP	GO:0036503	ERAD pathway	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901698	response to nitrogen compound	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR006597	Sel1-like	Pfam	527	549
IPR006597	Sel1-like	Pfam	266	298
IPR006597	Sel1-like	Pfam	409	443
IPR006597	Sel1-like	Pfam	147	180
IPR006597	Sel1-like	Pfam	561	592
IPR006597	Sel1-like	Pfam	338	370
IPR006597	Sel1-like	Pfam	375	404
IPR006597	Sel1-like	Pfam	302	335
IPR006597	Sel1-like	Pfam	458	476
IPR044623	HRD3	PANTHER	16	691
IPR006597	Sel1-like	SMART	336	372
IPR006597	Sel1-like	SMART	263	299
IPR006597	Sel1-like	SMART	145	180
IPR006597	Sel1-like	SMART	561	596
IPR006597	Sel1-like	SMART	300	335
IPR006597	Sel1-like	SMART	409	444
IPR006597	Sel1-like	SMART	373	408
IPR006597	Sel1-like	SMART	525	560
IPR011990	TPR-like_helical_dom_sf	Gene3D	104	219
IPR011990	TPR-like_helical_dom_sf	Gene3D	235	614
IPR006597	Sel1-like	Pfam	561	591
IPR006597	Sel1-like	Pfam	302	335
IPR006597	Sel1-like	Pfam	147	180
IPR006597	Sel1-like	Pfam	376	400
IPR006597	Sel1-like	Pfam	527	549
IPR006597	Sel1-like	Pfam	266	298
IPR006597	Sel1-like	Pfam	337	370
IPR006597	Sel1-like	Pfam	458	476
IPR006597	Sel1-like	Pfam	409	443
IPR011990	TPR-like_helical_dom_sf	Gene3D	104	219
IPR011990	TPR-like_helical_dom_sf	Gene3D	235	614
IPR006597	Sel1-like	SMART	263	299
IPR006597	Sel1-like	SMART	336	372
IPR006597	Sel1-like	SMART	561	596
IPR006597	Sel1-like	SMART	145	180
IPR006597	Sel1-like	SMART	300	335
IPR006597	Sel1-like	SMART	409	444
IPR006597	Sel1-like	SMART	373	408
IPR006597	Sel1-like	SMART	525	560
IPR044623	HRD3	PANTHER	16	692

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d028490_T001

Expression Profile

Co-expression Networks

Functional Annotation