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  5. Zm00001d028599_T001

Zm00001d028599_T001


Description : laccase 17


Gene families : OG_01_0000046 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000046_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d028599_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d028599_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_54
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_53


Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding ISM GOs from InterProScan
MF GO:0016491 oxidoreductase activity ISM GOs from InterProScan
BP GO:0046274 lignin catabolic process ISM GOs from InterProScan
CC GO:0048046 apoplast ISM GOs from InterProScan
MF GO:0052716 hydroquinone:oxygen oxidoreductase activity ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR045087 Cu-oxidase_fam PANTHER 32 569
IPR033138 Cu_oxidase_CS ProSitePatterns 534 554
IPR001117 Cu-oxidase_2nd Pfam 166 319
IPR034285 CuRO_2_LCC CDD 167 318
IPR008972 Cupredoxin Gene3D 383 576
IPR008972 Cupredoxin Gene3D 20 151
IPR017761 Laccase NCBIfam 31 576
IPR008972 Cupredoxin SUPERFAMILY 160 353
IPR002355 Cu_oxidase_Cu_BS ProSitePatterns 539 550
IPR008972 Cupredoxin Gene3D 164 355
IPR011707 Cu-oxidase-like_N Pfam 39 152
IPR008972 Cupredoxin SUPERFAMILY 30 179
IPR011706 Cu-oxidase_C Pfam 435 558
IPR008972 Cupredoxin SUPERFAMILY 359 576
IPR034289 CuRO_3_LCC CDD 422 559
IPR034288 CuRO_1_LCC CDD 35 151
IPR045087 Cu-oxidase_fam PANTHER 12 576
IPR034285 CuRO_2_LCC CDD 167 318
IPR002355 Cu_oxidase_Cu_BS ProSitePatterns 539 550
IPR008972 Cupredoxin Gene3D 383 576
IPR008972 Cupredoxin SUPERFAMILY 160 353
IPR001117 Cu-oxidase_2nd Pfam 166 319
IPR011706 Cu-oxidase_C Pfam 438 558
IPR008972 Cupredoxin Gene3D 164 355
IPR034289 CuRO_3_LCC CDD 422 559
IPR017761 Laccase TIGRFAM 31 576
IPR034288 CuRO_1_LCC CDD 35 151
IPR011707 Cu-oxidase-like_N Pfam 39 152
IPR033138 Cu_oxidase_CS ProSitePatterns 534 554
IPR008972 Cupredoxin SUPERFAMILY 30 179
IPR008972 Cupredoxin SUPERFAMILY 359 576
IPR008972 Cupredoxin Gene3D 20 151
HMM Family HMM Length Query Length e-Value Query Start Query End
AA1 358 577 4.5e-121 43 551
No external refs found!