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  5. Zm00001d029061_T001

Zm00001d029061_T001


Description : Pentatricopeptide repeat (PPR-like) superfamily protein


Gene families : OG_01_0019268 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0019268_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d029061_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d029061_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_188
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_277


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 177 211
IPR002885 Pentatricopeptide_rpt Pfam 312 344
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 282 316
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 212 246
IPR011990 TPR-like_helical_dom_sf Gene3D 310 406
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 355 389
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 317 351
IPR011990 TPR-like_helical_dom_sf Gene3D 240 309
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 430 464
IPR002885 Pentatricopeptide_rpt Pfam 149 172
IPR002885 Pentatricopeptide_rpt Pfam 176 225
IPR002885 Pentatricopeptide_rpt Pfam 246 295
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 247 281
IPR002885 Pentatricopeptide_rpt NCBIfam 215 247
IPR002885 Pentatricopeptide_rpt NCBIfam 358 390
IPR002885 Pentatricopeptide_rpt NCBIfam 180 213
IPR002885 Pentatricopeptide_rpt NCBIfam 250 282
IPR002885 Pentatricopeptide_rpt NCBIfam 284 317
IPR002885 Pentatricopeptide_rpt NCBIfam 319 346
IPR002885 Pentatricopeptide_rpt NCBIfam 432 462
IPR033443 PPR_long Pfam 366 488
IPR011990 TPR-like_helical_dom_sf Gene3D 72 239
IPR011990 TPR-like_helical_dom_sf Gene3D 407 547
IPR002885 Pentatricopeptide_rpt Pfam 358 387
IPR002885 Pentatricopeptide_rpt Pfam 432 461
IPR002885 Pentatricopeptide_rpt Pfam 149 172
IPR002885 Pentatricopeptide_rpt Pfam 176 225
IPR002885 Pentatricopeptide_rpt Pfam 250 295
IPR011990 TPR-like_helical_dom_sf Gene3D 240 309
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 212 246
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 430 464
IPR011990 TPR-like_helical_dom_sf Gene3D 72 239
IPR011990 TPR-like_helical_dom_sf Gene3D 407 547
IPR011990 TPR-like_helical_dom_sf Gene3D 310 406
IPR002885 Pentatricopeptide_rpt Pfam 312 344
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 355 389
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 317 351
IPR002885 Pentatricopeptide_rpt TIGRFAM 180 213
IPR002885 Pentatricopeptide_rpt TIGRFAM 432 462
IPR002885 Pentatricopeptide_rpt TIGRFAM 250 282
IPR002885 Pentatricopeptide_rpt TIGRFAM 215 247
IPR002885 Pentatricopeptide_rpt TIGRFAM 284 317
IPR002885 Pentatricopeptide_rpt TIGRFAM 358 390
IPR002885 Pentatricopeptide_rpt TIGRFAM 319 346
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 177 211
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 282 316
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 247 281

No CAZYmes available for this sequence

No external refs found!