Zm00001d029160_T001

Description : Actin-like ATPase superfamily protein

Gene families : OG_01_0015007 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0015007_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d029160_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d029160_T001
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_68
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_36

Type	GO Term	Name	Evidence	Source
CC	GO:0000408	EKC/KEOPS complex	ISM	GOs from InterProScan
BP	GO:0002949	tRNA threonylcarbamoyladenosine modification	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006400	tRNA modification	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008033	tRNA processing	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0070525	tRNA threonylcarbamoyladenosine metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	156	190
IPR000905	Gcp-like_dom	Pfam	218	358
IPR043129	ATPase_NBD	SUPERFAMILY	222	358
IPR011990	TPR-like_helical_dom_sf	Gene3D	82	186
IPR002885	Pentatricopeptide_rpt	Pfam	19	62
IPR002885	Pentatricopeptide_rpt	Pfam	122	169
IPR000905	Gcp-like_dom	PANTHER	239	390
IPR011990	TPR-like_helical_dom_sf	Gene3D	1	81
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	19	53
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	121	155
IPR002885	Pentatricopeptide_rpt	NCBIfam	21	55
IPR002885	Pentatricopeptide_rpt	NCBIfam	125	156
IPR043129	ATPase_NBD	SUPERFAMILY	222	358
IPR000905	Gcp-like_dom	PANTHER	6	393
IPR000905	Gcp-like_dom	Pfam	220	358
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	19	53
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	121	155
IPR011990	TPR-like_helical_dom_sf	Gene3D	1	81
IPR002885	Pentatricopeptide_rpt	Pfam	122	169
IPR002885	Pentatricopeptide_rpt	Pfam	19	62
IPR011990	TPR-like_helical_dom_sf	Gene3D	92	223
IPR002885	Pentatricopeptide_rpt	TIGRFAM	125	156
IPR002885	Pentatricopeptide_rpt	TIGRFAM	21	55
IPR034680	Kae1_archaea_euk	PANTHER	6	393
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	156	190

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d029160_T001

Expression Profile

Co-expression Networks

Functional Annotation