Zm00001d029161_T001

Description : Regulator of chromosome condensation (RCC1) family protein

Gene families : OG_01_0023836 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0023836_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d029161_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d029161_T001
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_49
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_483

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
BP	GO:0006508	proteolysis	ISM	GOs from InterProScan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008234	cysteine-type peptidase activity	ISM	GOs from InterProScan
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR000408	Reg_chr_condens	ProSitePatterns	662	672
IPR038765	Papain-like_cys_pep_sf	SUPERFAMILY	405	600
IPR004938	XG_FTase	PANTHER	1	381
IPR038765	Papain-like_cys_pep_sf	SUPERFAMILY	144	343
IPR000408	Reg_chr_condens	ProSiteProfiles	676	727
IPR009091	RCC1/BLIP-II	SUPERFAMILY	638	705
IPR009091	RCC1/BLIP-II	Gene3D	627	716
IPR003653	Peptidase_C48_C	ProSiteProfiles	170	312
IPR009091	RCC1/BLIP-II	SUPERFAMILY	638	705
IPR009091	RCC1/BLIP-II	Gene3D	627	716
IPR000408	Reg_chr_condens	ProSitePatterns	662	672
IPR000408	Reg_chr_condens	ProSiteProfiles	676	727
IPR038765	Papain-like_cys_pep_sf	SUPERFAMILY	405	600
IPR003653	Peptidase_C48_C	ProSiteProfiles	170	312
IPR000408	Reg_chr_condens	Pfam	675	706
IPR038765	Papain-like_cys_pep_sf	SUPERFAMILY	144	343

No CAZYmes available for this sequence

External Links

No external refs found!