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  5. Zm00001d029170_T004

Zm00001d029170_T004


Description : copper/zinc superoxide dismutase 1


Gene families : OG_01_0002098 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002098_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d029170_T004
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d029170_T004
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_274
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_121


Type GO Term Name Evidence Source
BP GO:0006801 superoxide metabolic process ISM GOs from InterProScan
MF GO:0046872 metal ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001424 SOD_Cu_Zn_dom PRINTS 43 65
IPR001424 SOD_Cu_Zn_dom PRINTS 98 120
IPR001424 SOD_Cu_Zn_dom PRINTS 79 88
IPR036423 SOD-like_Cu/Zn_dom_sf Gene3D 1 145
IPR018152 SOD_Cu/Zn_BS ProSitePatterns 43 53
IPR024134 SOD_Cu/Zn_/chaperone PANTHER 2 132
IPR036423 SOD-like_Cu/Zn_dom_sf SUPERFAMILY 2 127
IPR001424 SOD_Cu_Zn_dom CDD 2 127
IPR001424 SOD_Cu_Zn_dom Pfam 14 128
IPR018152 SOD_Cu/Zn_BS ProSitePatterns 43 53
IPR036423 SOD-like_Cu/Zn_dom_sf Gene3D 1 145
IPR001424 SOD_Cu_Zn_dom Pfam 14 128
IPR001424 SOD_Cu_Zn_dom PRINTS 43 65
IPR001424 SOD_Cu_Zn_dom PRINTS 98 120
IPR001424 SOD_Cu_Zn_dom PRINTS 79 88
IPR036423 SOD-like_Cu/Zn_dom_sf SUPERFAMILY 2 127
IPR001424 SOD_Cu_Zn_dom CDD 2 127
IPR024134 SOD_Cu/Zn_/chaperone PANTHER 1 223

No CAZYmes available for this sequence

No external refs found!