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  5. Zm00001d029174_T005

Zm00001d029174_T005


Description : homolog of nucleolar protein NOP56


Gene families : OG_01_0006746 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006746_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d029174_T005
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d029174_T005
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_165
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_152


Type GO Term Name Evidence Source
MF GO:0030515 snoRNA binding ISM GOs from InterProScan
CC GO:0031428 box C/D RNP complex ISM GOs from InterProScan
CC GO:0032040 small-subunit processome ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR012974 NOP58/56_N Pfam 4 69
IPR002687 Nop_dom ProSiteProfiles 295 413
IPR042239 Nop_C Gene3D 300 411
IPR045056 Nop56/Nop58 PANTHER 4 542
IPR012976 NOSIC SMART 170 222
IPR002687 Nop_dom Pfam 177 409
IPR036070 Nop_dom_sf SUPERFAMILY 163 412
IPR012974 NOP58/56_N Pfam 4 69
IPR045056 Nop56/Nop58 PANTHER 1 549
IPR012976 NOSIC SMART 170 222
IPR002687 Nop_dom ProSiteProfiles 295 413
IPR042239 Nop_C Gene3D 300 411
IPR002687 Nop_dom Pfam 177 409
IPR036070 Nop_dom_sf SUPERFAMILY 163 412

No CAZYmes available for this sequence

No external refs found!