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  5. Zm00001d029188_T006

Zm00001d029188_T006


Description : WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related


Gene families : OG_01_0007742 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007742_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d029188_T006
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d029188_T006
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_255
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_219


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR036285 PRP4-like_sf Gene3D 70 141
IPR001680 WD40_rpt ProSiteProfiles 421 462
IPR019775 WD40_repeat_CS ProSitePatterns 356 370
IPR001680 WD40_rpt Pfam 417 453
IPR001680 WD40_rpt Pfam 501 538
IPR001680 WD40_rpt Pfam 292 327
IPR001680 WD40_rpt Pfam 459 496
IPR001680 WD40_rpt Pfam 378 411
IPR001680 WD40_rpt Pfam 332 369
IPR001680 WD40_rpt SMART 289 328
IPR001680 WD40_rpt SMART 414 453
IPR001680 WD40_rpt SMART 330 369
IPR001680 WD40_rpt SMART 372 411
IPR001680 WD40_rpt SMART 499 538
IPR001680 WD40_rpt SMART 456 496
IPR014906 PRP4-like Pfam 101 129
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 275 537
IPR019775 WD40_repeat_CS ProSitePatterns 440 454
IPR001680 WD40_rpt ProSiteProfiles 379 420
IPR001680 WD40_rpt ProSiteProfiles 506 547
IPR020472 G-protein_beta_WD-40_rep PRINTS 440 454
IPR020472 G-protein_beta_WD-40_rep PRINTS 356 370
IPR020472 G-protein_beta_WD-40_rep PRINTS 315 329
IPR019775 WD40_repeat_CS ProSitePatterns 398 412
IPR014906 PRP4-like SMART 96 149
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 459 551
IPR001680 WD40_rpt ProSiteProfiles 337 378
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 216 331
IPR001680 WD40_rpt ProSiteProfiles 296 328
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 332 458
IPR001680 WD40_rpt ProSiteProfiles 463 505
IPR036285 PRP4-like_sf SUPERFAMILY 80 133
IPR001680 WD40_rpt ProSiteProfiles 463 505
IPR014906 PRP4-like SMART 96 149
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 332 458
IPR019775 WD40_repeat_CS ProSitePatterns 440 454
IPR001680 WD40_rpt ProSiteProfiles 337 378
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 275 537
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 216 331
IPR001680 WD40_rpt ProSiteProfiles 296 328
IPR036285 PRP4-like_sf Gene3D 70 141
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 459 551
IPR014906 PRP4-like Pfam 101 129
IPR019775 WD40_repeat_CS ProSitePatterns 398 412
IPR001680 WD40_rpt ProSiteProfiles 506 547
IPR001680 WD40_rpt ProSiteProfiles 379 420
IPR001680 WD40_rpt SMART 289 328
IPR001680 WD40_rpt SMART 414 453
IPR001680 WD40_rpt SMART 330 369
IPR001680 WD40_rpt SMART 372 411
IPR001680 WD40_rpt SMART 499 538
IPR001680 WD40_rpt SMART 456 496
IPR020472 G-protein_beta_WD-40_rep PRINTS 440 454
IPR020472 G-protein_beta_WD-40_rep PRINTS 356 370
IPR020472 G-protein_beta_WD-40_rep PRINTS 315 329
IPR001680 WD40_rpt ProSiteProfiles 421 462
IPR001680 WD40_rpt Pfam 332 369
IPR001680 WD40_rpt Pfam 416 453
IPR001680 WD40_rpt Pfam 380 411
IPR001680 WD40_rpt Pfam 501 538
IPR001680 WD40_rpt Pfam 292 328
IPR019775 WD40_repeat_CS ProSitePatterns 356 370
IPR036285 PRP4-like_sf SUPERFAMILY 80 133

No CAZYmes available for this sequence

No external refs found!