Zm00001d029833_T001

Description : Tetratricopeptide repeat (TPR)-like superfamily protein

Gene families : OG_01_0002086 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002086_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d029833_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d029833_T001
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_312
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_170

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006401	RNA catabolic process	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034655	nucleobase-containing compound catabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044270	cellular nitrogen compound catabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046700	heterocycle catabolic process	None	Extended
CC	GO:0055087	Ski complex	ISM	GOs from InterProScan
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR013105	TPR_2	Pfam	245	276
IPR011990	TPR-like_helical_dom_sf	Gene3D	1	189
IPR011990	TPR-like_helical_dom_sf	Gene3D	200	427
IPR019734	TPR_repeat	ProSiteProfiles	20	53
IPR019734	TPR_repeat	ProSiteProfiles	244	277
IPR011990	TPR-like_helical_dom_sf	Gene3D	523	868
IPR019734	TPR_repeat	SMART	20	53
IPR019734	TPR_repeat	SMART	244	277
IPR039226	Ski3/TTC37	PANTHER	1	881
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	4	373
IPR019734	TPR_repeat	ProSiteProfiles	244	277
IPR011990	TPR-like_helical_dom_sf	Gene3D	200	427
IPR019734	TPR_repeat	SMART	20	53
IPR019734	TPR_repeat	SMART	244	277
IPR011990	TPR-like_helical_dom_sf	Gene3D	1	189
IPR019734	TPR_repeat	ProSiteProfiles	20	53
IPR013105	TPR_2	Pfam	245	276
IPR011990	TPR-like_helical_dom_sf	Gene3D	523	868
IPR039226	Ski3/TTC37	PANTHER	1	663
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	4	373

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d029833_T001

Expression Profile

Co-expression Networks

Functional Annotation