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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0009530 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0009530_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d030208_T001 | |
| Neighborhood | Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d030208_T001 | |
| Cluster | Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_207 | |
| Cluster | Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_62 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 463 | 497 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 362 | 396 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 465 | 494 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 438 | 463 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 154 | 207 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 260 | 307 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 362 | 410 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 324 | 418 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 465 | 499 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 263 | 295 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 438 | 464 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 88 | 213 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 214 | 323 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 419 | 517 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 123 | 157 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 261 | 295 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 432 | 462 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 324 | 418 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 123 | 157 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 263 | 295 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 465 | 499 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 438 | 464 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 432 | 462 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 362 | 396 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 438 | 463 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 263 | 292 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 236 | 261 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 465 | 494 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 261 | 295 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 362 | 410 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 154 | 207 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 88 | 213 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 214 | 323 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 419 | 517 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 463 | 497 |
No CAZYmes available for this sequence
| No external refs found! |