Zm00001d030231_T002

Description : MuDR family transposase

Gene families : OG_01_0004465 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004465_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d030231_T002
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d030231_T002
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_277
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_259

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
MF	GO:0008270	zinc ion binding	ISM	GOs from InterProScan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR004332	Transposase_MuDR	Pfam	250	316
IPR007527	Znf_SWIM	Pfam	702	733
IPR018289	MULE_transposase_dom	Pfam	448	543
IPR000270	PB1_dom	Pfam	24	92
IPR007527	Znf_SWIM	ProSiteProfiles	702	734
IPR000270	PB1_dom	SMART	20	101
IPR006564	Znf_PMZ	SMART	709	736
IPR006564	Znf_PMZ	SMART	709	736
IPR018289	MULE_transposase_dom	Pfam	448	543
IPR007527	Znf_SWIM	Pfam	702	733
IPR000270	PB1_dom	Pfam	25	91
IPR000270	PB1_dom	SMART	20	101
IPR004332	Transposase_MuDR	Pfam	250	316
IPR007527	Znf_SWIM	ProSiteProfiles	702	734

No CAZYmes available for this sequence

External Links

No external refs found!