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  5. Zm00001d030359_T001

Zm00001d030359_T001


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG_01_0004410 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004410_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d030359_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d030359_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_34
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_70


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR035979 RBD_domain_sf SUPERFAMILY 183 271
IPR000504 RRM_dom ProSiteProfiles 201 271
IPR000504 RRM_dom Pfam 203 271
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 141 271
IPR036867 R3H_dom_sf SUPERFAMILY 42 143
IPR001374 R3H_dom ProSiteProfiles 40 109
IPR024771 SUZ ProSiteProfiles 113 184
IPR036867 R3H_dom_sf Gene3D 38 140
IPR000504 RRM_dom SMART 202 271
IPR001374 R3H_dom Pfam 42 87
IPR024771 SUZ Pfam 135 183
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 141 271
IPR024771 SUZ ProSiteProfiles 113 184
IPR036867 R3H_dom_sf SUPERFAMILY 42 143
IPR024771 SUZ Pfam 136 183
IPR035979 RBD_domain_sf SUPERFAMILY 183 271
IPR001374 R3H_dom ProSiteProfiles 40 109
IPR036867 R3H_dom_sf Gene3D 38 140
IPR000504 RRM_dom SMART 202 271
IPR000504 RRM_dom ProSiteProfiles 201 271
IPR000504 RRM_dom Pfam 203 271
IPR001374 R3H_dom Pfam 42 87

No CAZYmes available for this sequence

No external refs found!